Browse Element(s) Details


OsAffx.22380.1.S1_x_at

Description gb:NM_187010.1
DB_XREF= gi:34901105
GEN=OJ1060_D03.23
TID=OsAffx.22380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains ESTs C24875(S16049),AU174107(S16049),AU069259(C53616)~similar to Sporobolus stapfianus,pSD.13~unknown protein (OJ1060_D03.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g396809/11XYPPX repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22380.1.S1_x_at--634--4971Chr07:23780778..23780802 (25 bp)
GCAGGGCTACCCACCGGCTGGGTAC
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--416--1611Chr07:23780866..23780890 (25 bp)
AGCGGCCCTTCCTTCATGGAGGGAT
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--1060--10671Chr07:23780874..23781041 (25 bp)
TTCCTTCATGGAGGGATGGCGGTTA
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--1051--10031Chr07:23781053..23781077 (25 bp)
TAGTAATTACCGGACGCTGGTCTCA
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--1031--5791Chr07:23781065..23781089 (25 bp)
GACGCTGGTCTCAGATCTGTCCACG
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--285--8591Chr07:23781070..23781094 (25 bp)
TGGTCTCAGATCTGTCCACGCCGAC
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--788--7511Chr07:23781160..23781184 (25 bp)
GGGCCCTGAATAGACGCGTGAACTA
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--693--8971Chr07:23781166..23781190 (25 bp)
TGAATAGACGCGTGAACTACCACCC
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--860--5791Chr07:23781172..23781196 (25 bp)
GACGCGTGAACTACCACCCCTTGAA
LOC_Os07g39680
OsAffx.22380.1.S1_x_at--302--10751NONE
TTGAAACCTTGGCTGCCCTCTGCTG
NONE
OsAffx.22380.1.S1_x_at--145--8551Chr07:23781903..23781927 (25 bp)
TGGAGCTGATCAAACCGAACTGCTA
NONE
Target Sequence 
GCAGGGCTACCCACCGGCTGGGTACCCCCCGCAGCAGGGCTACCCTCCGCCGTACGCGCAGCCGCCGCCCCAGCAGCAGC
AGCACAGCAGCGGCCCTTCCTTCATGGAGGGATGGCGGTTAGGGAGTAGTAGTAGTAATTACCGGACGCTGGTCTCAGAT
CTGTCCACGCCGACGGGTGCGGTGGCCGGCGCGTCCGCCGCGGCGGCGGCGGCGGCGGCGGCGCACGTTCGCTGTGGTGG
GGCCCTGAATAGACGCGTGAACTACCACCCCTTGAAACCTTGGCTGCCCTCTGCTGCTGCTGTCTCCTGGACGCCTGCTT
CTGAGGATAGAGGCGACGGGTGCAAGAGAGCTGAAGAGATTTGTTTCATGGAGCTGATCAAACCGAACTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22380.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis