Browse Element(s) Details


OsAffx.28823.1.S1_at

Description tigr:9635.m03957
TID=OsAffx.28823.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3964011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28823.1.S1_at--36--4911Chr07:23763938..23763962 (25 bp)
GCTTCATCCGCAGCGCCGGTGGCTT
LOC_Os07g39640
OsAffx.28823.1.S1_at--724--4091Chr07:23763748..23763772 (25 bp)
CGACGGAGTGCCTGACGTCGCTCGT
LOC_Os07g39640
OsAffx.28823.1.S1_at--94--8091Chr07:23763723..23763747 (25 bp)
GGAGCTGCTGCCGTGCGTCGACTAC
LOC_Os07g39640
OsAffx.28823.1.S1_at--548--5751Chr07:23763659..23763683 (25 bp)
GACGGATTCAGGTCGCTCGTTGGCA
LOC_Os07g39640
OsAffx.28823.1.S1_at--551--6551Chr07:23763655..23763679 (25 bp)
GATTCAGGTCGCTCGTTGGCAGCGC
LOC_Os07g39640
OsAffx.28823.1.S1_at--207--3212Chr12:2643448..2643865 (25 bp)
CAATGGCGACATGAGCAGGATGATC
NONE
OsAffx.28823.1.S1_at--546--7991Chr07:23763589..23763613 (25 bp)
GGATGATCTCCAGGCCCATCGATCC
LOC_Os07g39640
OsAffx.28823.1.S1_at--485--891Chr07:23763578..23763602 (25 bp)
AGGCCCATCGATCCGGTCCGCATGG
LOC_Os07g39640
OsAffx.28823.1.S1_at--434--6371Chr07:23763569..23763593 (25 bp)
GATCCGGTCCGCATGGTGCTCCTTC
LOC_Os07g39640
OsAffx.28823.1.S1_at--766--4151Chr07:23763520..23763544 (25 bp)
CGCCGCAGTCGCTTTTCATATGCTA
LOC_Os07g39640
OsAffx.28823.1.S1_at--906--4211Chr07:23763518..23763542 (25 bp)
CCGCAGTCGCTTTTCATATGCTACA
LOC_Os07g39640
Target Sequence 
GCTTCATCCGCAGCGCCGGTGGCTTCGCTGTTCCCCGGCCTCCCGCCATTGCCGCCGCTGCCAGCGCTCCCCGCTCTGCC
GCCGCTTCCACCGCTGCCCGCCTTACCGCCGCTGCCACCGTTGCCGCCATTGCCGCCGCTCCCTTCACCCGGGACGACGA
CGACGCGGCCGCGGCCACCATCGCCACCGCCGACGGAGTGCCTGACGTCGCTCGTGGAGCTGCTGCCGTGCGTCGACTAC
CTCACCAACGACGCCACCGCGCCGCCGGGCGCCTGCTGCGACGGATTCAGGTCGCTCGTTGGCAGCGCGCTCATCTGCCT
CTGCCACGGCATCAATGGCGACATGAGCAGGATGATCTCCAGGCCCATCGATCCGGTCCGCATGGTGCTCCTTCCCGCCA
TGTGCAGCACCATGCTGCCGCCGCAGTCGCTTTTCATATGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis