Browse Element(s) Details


OsAffx.28824.1.S1_x_at

Description tigr:9635.m03958
TID=OsAffx.28824.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3965011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28824.1.S1_x_at--583--2671Chr07:23765031..23765055 (25 bp)
AAGCGACGCGATGTTGCCGCAGGAC
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--1022--6671Chr07:23765043..23765067 (25 bp)
GTTGCCGCAGGACAACTAAACGTTG
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--1131--9111Chr07:23765105..23765129 (25 bp)
TGCGGATGCGGATACGGCTCACCGA
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--688--7951Chr07:23765114..23765138 (25 bp)
GGATACGGCTCACCGACTTGGTGAA
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--1145--1771Chr07:23765125..23765149 (25 bp)
ACCGACTTGGTGAAGAACCACGTGA
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--882--7351Chr07:23765134..23765158 (25 bp)
GTGAAGAACCACGTGAGCATGAAGC
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--389--4631Chr07:23765549..23765573 (25 bp)
GCGATGCTCCTTACATGTGTGGTGA
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--593--2111Chr07:23765561..23765585 (25 bp)
ACATGTGTGGTGACAGTAGCCAGAT
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--101--1311Chr07:23765582..23765606 (25 bp)
AGATGATGGCCGGTGATAGCAAGCA
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--467--6491Chr07:23765596..23766073 (25 bp)
GATAGCAAGCAGAAATCAACCCAGT
LOC_Os07g39650
OsAffx.28824.1.S1_x_at--339--1411Chr07:23766059..23766083 (25 bp)
AGAAATCAACCCAGTACCCCGATGC
LOC_Os07g39650
Target Sequence 
AAGCGACGCGATGTTGCCGCAGGACAACTAAACGTTGGTGTGGTGGGAGAACTCGGAGGTGAAGTTGGAGGTGGTGCGGA
TGCGGATACGGCTCACCGACTTGGTGAAGAACCACGTGAGCATGAAGCGNNNCCCGGCGATGCTCCTTACATGTGTGGTG
ACAGTAGCCAGATGATGGCCGGTGATAGCAAGCAGAAATCAACCCAGTACCCCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis