Browse Element(s) Details


Os.7319.1.S1_at

Description gb:CB096363
DB_XREF= gi:27920555
DB_XREF=AF53-Rpf_03_E13_T7_051.ab1
CLONE=C0000877
TID=Os.7319.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) amino acid acetyltransferase(N-acetylglutamate synthase)-like protein~contains ESTs AU100734(C12420),C26484(C12420) (OJ1060_D03.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3969010/11GCN5-related N-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006526biological_processarginine biosynthesis
GO:0003991molecular_functionacetylglutamate kinase activity
GO:0004042molecular_functionamino-acid N-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7319.1.S1_at--961--2971Chr07:23784251..23784275 (25 bp)
AATGTCCCTTGGTCTGGAGAAATTA
LOC_Os07g39690
Os.7319.1.S1_at--789--5591Chr07:23784233..23784257 (25 bp)
GAAATTATTCTTGCTCACGACACGG
LOC_Os07g39690
Os.7319.1.S1_at--358--3351NONE
CACGACACGGACAGCTGATTGGTTT
NONE
Os.7319.1.S1_at--767--6711Chr07:23783740..23783764 (25 bp)
GTTCGATTGAATCCATTCCTGAGCA
LOC_Os07g39690
Os.7319.1.S1_at--177--5531Chr07:23783710..23783734 (25 bp)
GAAAACGCATCAATTTATCACGAGG
LOC_Os07g39690
Os.7319.1.S1_at--415--10511Chr07:23783662..23783686 (25 bp)
TTCAGCCAAAGCACGCCAGTGTTAC
LOC_Os07g39690
Os.7319.1.S1_at--864--6771Chr07:23783642..23783666 (25 bp)
GTTACTCCCAACAATATTACTGCCA
LOC_Os07g39690
Os.7319.1.S1_at--438--2471Chr07:23783584..23783608 (25 bp)
AACACTATATCAGCTCTGAGCCTCT
LOC_Os07g39690
Os.7319.1.S1_at--431--5231Chr07:23783326..23783350 (25 bp)
GAATATTTTACGTCAGGTTCCCTAT
LOC_Os07g39690
Os.7319.1.S1_at--102--7911Chr07:23783311..23783335 (25 bp)
GGTTCCCTATTTATGTGATGCTGAT
LOC_Os07g39690
Os.7319.1.S1_at--895--8851Chr07:23783296..23783320 (25 bp)
TGATGCTGATAACGACCTCACACGC
LOC_Os07g39690
Target Sequence 
AATGTCCCTTGGTCTGGAGAAATTATTCTTGCTCACGACACGGACAGCTGATTGGTTTGTGCGGCGTGGCTTCTTGGAGT
GTTCGATTGAATCCATTCCTGAGCAAAGGAGAAAACGCATCAATTTATCACGAGGATCAAAGTATTATATAAAGCAGCTT
CAGCCAAAGCACGCCAGTGTTACTCCCAACAATATTACTGCCAGATGATATAACGCATATGGAATTGGTGCAGTTCAACA
CTATATCAGCTCTGAGCCTCTGACGCCNCCAAATTTTGAAGGTATGTTGTACTAAATTAGGATTTCAGGGAGAGAAACAT
AGGAACTGTTAGTGATGTCGATTTTTGAAATGTTGTGTTAATTTATTTACATGGTTGCAAAGGAAATTTGTTGCACAATA
GAATCAGAGTAGATCATACCTGGAGAAATTNTATATAAGTAGGCTGAAAGCTTGAAAAGGAACTTCTGATAAGTGGGAGT
NANCNNCANNNNNNGANTANNNNNCNNNAAGAGAATATTTTACGTCAGGTTCCCTATTTATGTGATGCTGATAACGACCT
CACACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis