Browse Element(s) Details


Os.17310.1.S1_at

Description gb:AK105064.1
DB_XREF= gi:32990273
TID=Os.17310.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor-like protein~contains ESTs C99649(E20996),C99648(E20996) (OJ1060_D03.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E08, full insert sequence.
FL= gb:AK066419.1 gb:AK105064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g397109/11ETC complex I subunit conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009631biological_processcold acclimation
GO:0005739cellular_componentmitochondrion
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17310.1.S1_at--335--3811NONE
CTCCGCCGCAAGGTTGTAATATATT
NONE
Os.17310.1.S1_at--56--2171NONE
ACACCTCTTTTGAAGGCCAAATCTT
NONE
Os.17310.1.S1_at--945--5031Chr07:23796624..23796648 (25 bp)
GCAGAGCAAGCCTGAGCACTAATCT
LOC_Os07g39710
Os.17310.1.S1_at--219--5111Chr07:23796609..23796633 (25 bp)
GCACTAATCTTGCATGCTACATTGC
LOC_Os07g39710
Os.17310.1.S1_at--983--9871Chr07:23796592..23796616 (25 bp)
TACATTGCTAGCAGGACATGCACAA
LOC_Os07g39710
Os.17310.1.S1_at--181--10871Chr07:23796538..23796562 (25 bp)
TTGGTTTCTCCAATCTGTTGTGCGA
LOC_Os07g39710
Os.17310.1.S1_at--1018--1051Chr07:23796514..23796538 (25 bp)
AGTGTGGGCTTAGACCGTTCCTCAA
LOC_Os07g39710
Os.17310.1.S1_at--822--6691Chr07:23796498..23796522 (25 bp)
GTTCCTCAACCAACTCTCAATTATA
LOC_Os07g39710
Os.17310.1.S1_at--837--10171Chr07:23796477..23796501 (25 bp)
TATAATAAGCGTGCACTGTGATCAA
LOC_Os07g39710
Os.17310.1.S1_at--267--3171Chr07:23796428..23796452 (25 bp)
AATTGTTTACCATTATCCTTCCACA
LOC_Os07g39710
Os.17310.1.S1_at--193--3591Chr07:23796418..23796442 (25 bp)
CATTATCCTTCCACATCATTTCATA
LOC_Os07g39710
Target Sequence 
CTCCGCCGCAAGGTTGTAATATATTCACCCGCTAGGACTGCATCTCAGCAGGGTTCAGGCAAAGTCGGGAGGTGGAAAAT
CAACTTTGTGTCAACCCAAAAGTGGGAGAACCCATTAATGGGATGGACATCTACTGGAGATCCATATGCTAATGTTGGTG
AAGCAGGGCTTACGTTTGACAGTGCAGATTCAGCAAAGGCATTTGCTGAAAAGCATGGATGGGATTATGTGGTTAGGAAA
CGCCATACACCTCTTTTGAAGGCCAAATCTTATGCAGAGAACTTCAAGTGGAGGGGTCCCCCGAAGGCAGAGCAAGCCTG
AGCACTAATCTTGCATGCTACATTGCTAGCAGGACATGCACAAGATGGTGTTTACCCCCATATGTGTTGTTTTTGGTTTC
TCCAATCTGTTGTGCGAGTGTGGGCTTAGACCGTTCCTCAACCAACTCTCAATTATAATAAGCGTGCACTGTGATCAAAT
AGAATGATTTCCTGTGTACTAAAATTGTTTACCATTATCCTTCCACATCATTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis