Browse Element(s) Details


OsAffx.28825.1.S1_at

Description gb:NM_187008.1
DB_XREF= gi:34901101
TID=OsAffx.28825.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1060_D03.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3966011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28825.1.S1_at--457--4352Chr07:23770856..23770880 (25 bp)
CCAGTCCCATATATGTCAGTCTCAG
LOC_Os07g39660
OsAffx.28825.1.S1_at--968--752Chr07:23770868..23770892 (25 bp)
ATGTCAGTCTCAGGGACGTCTGCGG
LOC_Os07g39660
OsAffx.28825.1.S1_at--860--6172Chr07:23770901..23770925 (25 bp)
GAGGAAAAGGACGACCCCTGCAGTG
LOC_Os07g39660
OsAffx.28825.1.S1_at--1025--5812Chr07:23770913..23770937 (25 bp)
GACCCCTGCAGTGCCGGAGGAAGAC
LOC_Os07g39660
OsAffx.28825.1.S1_at--755--8192Chr07:23770931..23770955 (25 bp)
GGAAGACGCGGGTCGCTGCTCACCA
LOC_Os07g39660
OsAffx.28825.1.S1_at--572--8052Chr07:23770963..23770987 (25 bp)
GGAGATGCGATATGATGTTCGTCGA
LOC_Os07g39660
OsAffx.28825.1.S1_at--504--732Chr07:23770977..23771001 (25 bp)
ATGTTCGTCGAATTGAGCCGACGGA
LOC_Os07g39660
OsAffx.28825.1.S1_at--64--1652Chr07:23770992..23771016 (25 bp)
AGCCGACGGAGAGCTTGAAAGACAC
LOC_Os07g39660
OsAffx.28825.1.S1_at--557--1532Chr07:23771003..23771027 (25 bp)
AGCTTGAAAGACACGGCTGCTCGTG
LOC_Os07g39660
OsAffx.28825.1.S1_at--265--3792Chr07:23771022..23771046 (25 bp)
CTCGTGGAGCCAAGCCGCGTGTGTC
LOC_Os07g39660
OsAffx.28825.1.S1_at--579--1672Chr07:23771034..23771058 (25 bp)
AGCCGCGTGTGTCCTCATCACGCAA
LOC_Os07g39660
Target Sequence 
CCAGTCCCATATATGTCAGTCTCAGGGACGTCTGCGGCGCCGGAGGAGGAAAAGGACGACCCCTGCAGTGCCGGAGGAAG
ACGCGGGTCGCTGCTCACCAGGCAAAAGGAGATGCGATATGATGTTCGTCGAATTGAGCCGACGGAGAGCTTGAAAGACA
CGGCTGCTCGTGGAGCCAAGCCGCGTGTGTCCTCATCACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis