Browse Element(s) Details


Os.10483.1.S1_at

Description gb:AK071269.1
DB_XREF= gi:32981292
TID=Os.10483.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU183957(R0167),D46798(S11701),AU077610(E20630)~similar to Arabidopsis thaliana chromosome5, At5g55530~unknown protein (OJ1060_D03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088L08, full insert sequence.
FL= gb:AK071269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3962011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39620Os.10483.1.S1_at11/117+23744761..23746984C2 domain containing protein, expressed
LOC_Os07g39630Os.4847.1.S1_at11/117+23751413..23758878Calcium-binding protein 39, putative, expressed
LOC_Os07g39640OsAffx.28823.1.S1_at11/117+23763289..23764008expressed protein
LOC_Os07g39640OsAffx.28823.1.S1_x_at11/117+23763289..23764008expressed protein
LOC_Os07g39650OsAffx.28824.1.S1_x_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.28824.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39650OsAffx.22381.1.S1_at11/117+23764956..23766123hypothetical protein
LOC_Os07g39660OsAffx.28825.1.S1_at11/117+23770817..23771089hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10483.1.S1_at--174--3531Chr07:23746546..23746570 (25 bp)
CATGCAGCAGTTCACGGAGTCCCTC
LOC_Os07g39620
Os.10483.1.S1_at--571--8991Chr07:23746578..23746602 (25 bp)
TGAAGCTCCCGCTGGACCTGGACAA
LOC_Os07g39620
Os.10483.1.S1_at--1034--7371Chr07:23746719..23746743 (25 bp)
GTGGGCCGGAGAAATCTCCCAAAGT
LOC_Os07g39620
Os.10483.1.S1_at--100--3691Chr07:23746736..23746760 (25 bp)
CCCAAAGTATTCTACGGAAGCCGTG
LOC_Os07g39620
Os.10483.1.S1_at--173--8191Chr07:23746751..23746775 (25 bp)
GGAAGCCGTGCTTTCTTCTGAAGCA
LOC_Os07g39620
Os.10483.1.S1_at--653--4951Chr07:23746786..23746810 (25 bp)
GCATTTGCAGCCGTCGGATCTCAGC
LOC_Os07g39620
Os.10483.1.S1_at--934--4491Chr07:23746795..23746819 (25 bp)
GCCGTCGGATCTCAGCTGAAACTTA
LOC_Os07g39620
Os.10483.1.S1_at--965--1311Chr07:23746830..23746854 (25 bp)
AGAGGAATAACACGTTCTCCTCCTC
LOC_Os07g39620
Os.10483.1.S1_at--206--9131Chr07:23746868..23746892 (25 bp)
TGCTGTTCTTGTTCTAGGCTTGTCA
LOC_Os07g39620
Os.10483.1.S1_at--6--3711Chr07:23746881..23746905 (25 bp)
CTAGGCTTGTCATCAGATCTCGCAA
LOC_Os07g39620
Os.10483.1.S1_at--1107--5771Chr07:23746906..23746930 (25 bp)
GACGAGCAAACTAGCTGCTCTGTTT
LOC_Os07g39620
Target Sequence 
CATGCAGCAGTTCACGGAGTCCCTCGCCAAGATGAAGCTCCCGCTGGACCTGGACAACGGCAGCGACAAGAGCGCGNCCG
TCTCCGGCGCCGGCGCCGCCGCTTCCGACGCGGACTCCAGCGGCGCCGACTCGGGCGCGGCGGCCGCGGCGGCGGCGAAG
AAGCCGATGGCCGGTGGGCCGGAGAAATCTCCCAAAGTATTCTACGGAAGCCGTGCTTTCTTCTGAAGCAAAGAGATGGG
GCATTTGCAGCCGTCGGATCTCAGCTGAAACTTACTACTAGTTCAGAGGAATAACACGTTCTCCTCCTCCTGCTCCTGCT
GCTGCTGTTCTTGTTCTAGGCTTGTCATCAGATCTCGCAAGACGAGCAAACTAGCTGCTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis