Browse Element(s) Details


Os.18065.1.S1_at

Description gb:AK120683.1
DB_XREF= gi:37990306
TID=Os.18065.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164A10, full insert sequence.
FL= gb:AK120683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3978011/11Repeat in ubiquitin-activating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed
LOC_Os07g39810Os.44172.1.S1_at11/117+23849890..23850754lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0016925biological_processprotein sumoylation
GO:0045116biological_processprotein neddylation
GO:0005634cellular_componentnucleus
GO:0004839molecular_functionubiquitin activating enzyme activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0008642molecular_functionubiquitin-like activating enzyme activity
GO:0019781molecular_functionNEDD8 activating enzyme activity
GO:0019948molecular_functionSUMO activating enzyme activity
GO:0046982molecular_functionprotein heterodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18065.1.S1_at--35--10591Chr07:23838316..23838340 (25 bp)
TTCTCGTTTCTGCTATGCGGTGATA
LOC_Os07g39780
Os.18065.1.S1_at--629--3791Chr07:23838318..23838342 (25 bp)
CTCGTTTCTGCTATGCGGTGATATA
LOC_Os07g39780
Os.18065.1.S1_at--693--4031Chr07:23838320..23838344 (25 bp)
CGTTTCTGCTATGCGGTGATATATC
LOC_Os07g39780
Os.18065.1.S1_at--26--9491Chr07:23838324..23838348 (25 bp)
TCTGCTATGCGGTGATATATCTTCT
LOC_Os07g39780
Os.18065.1.S1_at--618--11Chr07:23838350..23838374 (25 bp)
ATTGTTTTCATGGTTCCGTTGCCCT
LOC_Os07g39780
Os.18065.1.S1_at--576--6791Chr07:23838353..23838377 (25 bp)
GTTTTCATGGTTCCGTTGCCCTGAT
LOC_Os07g39780
Os.18065.1.S1_at--551--9631Chr07:23838357..23838381 (25 bp)
TCATGGTTCCGTTGCCCTGATACGA
LOC_Os07g39780
Os.18065.1.S1_at--69--7911Chr07:23838361..23838385 (25 bp)
GGTTCCGTTGCCCTGATACGAGGAA
LOC_Os07g39780
Os.18065.1.S1_at--453--9291Chr07:23838364..23838388 (25 bp)
TCCGTTGCCCTGATACGAGGAATAT
LOC_Os07g39780
Os.18065.1.S1_at--1046--4531Chr07:23838370..23838394 (25 bp)
GCCCTGATACGAGGAATATATTGGT
LOC_Os07g39780
Os.18065.1.S1_at--312--5231Chr07:23838383..23838407 (25 bp)
GAATATATTGGTGGATTTAGACTTC
LOC_Os07g39780
Target Sequence 
TTCTCGTTTCTGCTATGCGGTGATATATCTTCTGATTGTTTTCATGGTTCCGTTGCCCTGATACGAGGAATATATTGGTG
GATTTAGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis