Browse Element(s) Details


Os.6835.1.S1_at

Description gb:AK058328.1
DB_XREF= gi:32968346
TID=Os.6835.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C01, full insert sequence.
FL= gb:AK104756.1 gb:AK072501.1 gb:AK058328.1 gb:AK104617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4003011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40030Os.6835.1.S1_at11/117+24018685..24023410transducin family protein, putative, expressed
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005730cellular_componentnucleolus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6835.1.S1_at--722--10471Chr07:24022618..24022642 (25 bp)
TTAACCACCAAAGCTGGGCGTGTTC
LOC_Os07g40030
Os.6835.1.S1_at--868--7571Chr07:24022633..24022657 (25 bp)
GGGCGTGTTCATGTGCTAGATTCAT
LOC_Os07g40030
Os.6835.1.S1_at--285--5111Chr07:24023117..24023141 (25 bp)
GCACAGATAGTGAGCCACCGCTAAT
LOC_Os07g40030
Os.6835.1.S1_at--791--1791Chr07:24023133..24023157 (25 bp)
ACCGCTAATTAGATGGGCTCCAGGA
LOC_Os07g40030
Os.6835.1.S1_at--538--7571Chr07:24023147..24023171 (25 bp)
GGGCTCCAGGATCTTTGATGTTCTT
LOC_Os07g40030
Os.6835.1.S1_at--584--10551Chr07:24023167..24023191 (25 bp)
TTCTTGACTGCATCTTCGGAACTGT
LOC_Os07g40030
Os.6835.1.S1_at--229--10851Chr07:24023196..24023220 (25 bp)
TTGGGTCCCTGATCTATCTAAGCTG
LOC_Os07g40030
Os.6835.1.S1_at--1047--1591Chr07:24023216..24023240 (25 bp)
AGCTGGGATCCTTTACTGTTAGTAA
LOC_Os07g40030
Os.6835.1.S1_at--1042--871Chr07:24023279..24023303 (25 bp)
AGGCCTTTGTTCTAGCTGTTTGCAA
LOC_Os07g40030
Os.6835.1.S1_at--385--9051Chr07:24023332..24023356 (25 bp)
TGCAGTGGGTCAAGCCTCGGGTCAA
LOC_Os07g40030
Os.6835.1.S1_at--1058--1111Chr07:24023360..24023384 (25 bp)
AGTCCGGGCCATCTGCATATCTTGA
LOC_Os07g40030
Target Sequence 
TTAACCACCAAAGCTGGGCGTGTTCATGTGCTAGATTCATTTCATGGCAATAATATAGCCAACATACAACGTGAAGCCAG
TGGTAAGCAATTCGACGCTGGAAGCATCATTCAGCCCTGATGGAAACCATATAATATCTGGCTCTGGTGATGGCAGTGTA
TATGCTTGGAATGTTAGGAGTGGAAAGGTTGCTCGCTGGGGAAGCACAGATAGTGAGCCACCGCTAATTAGATGGGCTCC
AGGATCTTTGATGTTCTTGACTGCATCTTCGGAACTGTCTTGTTGGGTCCCTGATCTATCTAAGCTGGGATCCTTTACTG
TTAGTAAGTAATTCGAATGGTACGAGTTGTTGTTTGTGTATGCTCAGGCCTTTGTTCTAGCTGTTTGCAAAATGACAATG
TTAGGTAAAAATCTGAGCTGCAGTGGGTCAAGCCTCGGGTCAACCTAGTCCGGGCCATCTGCATATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis