Browse Element(s) Details


OsAffx.16648.1.S1_at

Description tigr:9635.m03997
TID=OsAffx.16648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40030Os.6835.1.S1_at11/117+24018685..24023410transducin family protein, putative, expressed
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16648.1.S1_at--821--5871Chr07:24033757..24033781 (25 bp)
GAGCGAGTCGTCCAAGAGCGCCTCC
LOC_Os07g40040
OsAffx.16648.1.S1_at--1080--3371Chr07:24033690..24033714 (25 bp)
CAGCCGCGGCGGTCTCTGTCGAGCA
LOC_Os07g40040
OsAffx.16648.1.S1_at--476--7811Chr07:24033680..24033704 (25 bp)
GGTCTCTGTCGAGCAGCCTGTTCTA
LOC_Os07g40040
OsAffx.16648.1.S1_at--620--4211Chr07:24033434..24033458 (25 bp)
CCGCCGACAAGAAGCATCCGGTGGT
LOC_Os07g40040
OsAffx.16648.1.S1_at--269--8631Chr07:24033413..24033437 (25 bp)
TGGTGGGTCTCTTCGGCGACAGCTT
LOC_Os07g40040
OsAffx.16648.1.S1_at--695--10611Chr07:24033402..24033426 (25 bp)
TTCGGCGACAGCTTCGGGTGCAAGT
LOC_Os07g40040
OsAffx.16648.1.S1_at--132--5651Chr07:24033396..24033420 (25 bp)
GACAGCTTCGGGTGCAAGTGCTCCC
LOC_Os07g40040
OsAffx.16648.1.S1_at--576--1911Chr07:24033368..24033392 (25 bp)
ACGTGGTGGAGCCAGTCACCTTGCC
LOC_Os07g40040
OsAffx.16648.1.S1_at--723--8411Chr07:24033304..24033328 (25 bp)
GGCCGGCGACAAGAAAGCTCAGAGT
LOC_Os07g40040
OsAffx.16648.1.S1_at--869--2691Chr07:24033290..24033314 (25 bp)
AAGCTCAGAGTGTTCGTCGCAGCAG
LOC_Os07g40040
OsAffx.16648.1.S1_at--407--10611Chr07:24033278..24033302 (25 bp)
TTCGTCGCAGCAGGATCCTGGACTG
LOC_Os07g40040
Target Sequence 
GAGCGAGTCGTCCAAGAGCGCCTCCTCCGACCACTCCGCCGCGCATCCGCCGCCGCAGCAGCAGCAGCAGCCGCGGCGGT
CTCTGTCGAGCAGCCTGTTCTACGCGCACCCGAGCCCGTCGCCGCAGCTGCGCACCCGGCCGCCGCGCCGCAGCACCGGG
TCGGCTCCCCCGCCGCCGCCGGCCACCGCGTGGGGCATCTTCCGCCTCGGCGTCGTCGGCGCCCCGGACGTGTACCCTCC
ACGCTCCACAGATTCCAAGAACGCCGCCGCCGCAGCAAAAGTCGGCAGCAGCAGGAGCGCACGGTTCGAGCCGGCGAGCA
CCGCCGCCGACAAGAAGCATCCGGTGGTGGGTCTCTTCGGCGACAGCTTCGGGTGCAAGTGCTCCCCCGACGTGGTGGAG
CCAGTCACCTTGCCGGCGGCGGCGAAGAGGGCCAAGGCCAAGAACAAGAACAAGGCCGGCGACAAGAAAGCTCAGAGTGT
TCGTCGCAGCAGGATCCTGGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis