Browse Element(s) Details


OsAffx.28834.1.S1_at

Description tigr:9635.m04001
TID=OsAffx.28834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g400709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28834.1.S1_at--298--8631NONE
TGGTGGCACCGAGCCTGAGAATCGA
NONE
OsAffx.28834.1.S1_at--892--8891NONE
TGAGAATCGAGTTTTCCTTTGGACA
NONE
OsAffx.28834.1.S1_at--877--2771Chr07:24052204..24052228 (25 bp)
AAGAGCACGCAGCTGTGTTTGTTGC
LOC_Os07g40070
OsAffx.28834.1.S1_at--973--971Chr07:24052232..24052256 (25 bp)
AGGAGACAGTGGTCCATCCTTCTTC
LOC_Os07g40070
OsAffx.28834.1.S1_at--471--2331Chr07:24052263..24052287 (25 bp)
AAAGACACCGGTTTCAGAGTATTCA
LOC_Os07g40070
OsAffx.28834.1.S1_at--279--10211Chr07:24052282..24052423 (25 bp)
TATTCAGGGAGACAGTGGCCCATCC
LOC_Os07g40070
OsAffx.28834.1.S1_at--642--8231Chr07:24052439..24052463 (25 bp)
GGCACCGGTTTCAGAGTATTCACTA
LOC_Os07g40070
OsAffx.28834.1.S1_at--686--351Chr07:24052667..24052691 (25 bp)
ATCAAATTCCAAGCTTCTTACCTCG
LOC_Os07g40070
OsAffx.28834.1.S1_at--528--10451Chr07:24052684..24052708 (25 bp)
TTACCTCGGGAGTTTGTTCGCGTCG
LOC_Os07g40070
OsAffx.28834.1.S1_at--632--10791Chr07:24052697..24052721 (25 bp)
TTGTTCGCGTCGTCAGCCATTGTGC
LOC_Os07g40070
OsAffx.28834.1.S1_at--159--4331Chr07:24052713..24052737 (25 bp)
CCATTGTGCGCTGCTTTGATTTGAC
LOC_Os07g40070
Target Sequence 
TGGTGGCACCGAGCCTGAGAATCGAGTTTTCCTTTGGACAAATTTTGAACTAGTCAAAGAGCACGCAGCTGTGTTTGTTG
CTTCAGGAGACAGTGGTCCATCCTTCTTCCGTAGAAAAGACACCGGTTTCAGAGTATTCAGGGAGACAGTGGCCCATCCC
TCTTCCGTAGAAAAGGCACCGGTTTCAGAGTATTCACTATTCAGGATCAAATTCCAAGCTTCTTACCTCGGGAGTTTGTT
CGCGTCGTCAGCCATTGTGCGCTGCTTTGATTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis