Browse Element(s) Details


Os.5095.1.S1_at

Description gb:AK062359.1
DB_XREF= gi:32972377
TID=Os.5095.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H03, full insert sequence.
FL= gb:AK062359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4013011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5095.1.S1_at--923--1491Chr07:24077748..24077772 (25 bp)
AGCACTCCAAGAAGGCTAAGGCCCC
LOC_Os07g40130
Os.5095.1.S1_at--193--2731Chr07:24076878..24076902 (25 bp)
AAGCAAAACGGCGTCGTGCAACGAC
LOC_Os07g40130
Os.5095.1.S1_at--126--2091Chr07:24076806..24076830 (25 bp)
ACATTTTGCGCTGTATTTTGCTCGT
LOC_Os07g40130
Os.5095.1.S1_at--349--10631Chr07:24076789..24076813 (25 bp)
TTGCTCGTCGATTCTTTTACGGGAC
LOC_Os07g40130
Os.5095.1.S1_at--912--6171Chr07:24076752..24076776 (25 bp)
GAGGAGGGACCTTAGCTTTGGCTTT
LOC_Os07g40130
Os.5095.1.S1_at--812--10231Chr07:24076736..24076760 (25 bp)
TTTGGCTTTGGCTTTACCACTCTCC
LOC_Os07g40130
Os.5095.1.S1_at--1005--1991Chr07:24076718..24076742 (25 bp)
ACTCTCCCAACCACATTTGATGATT
LOC_Os07g40130
Os.5095.1.S1_at--437--6291Chr07:24076700..24076724 (25 bp)
GATGATTGAGCGATCGCCATGCCTC
LOC_Os07g40130
Os.5095.1.S1_at--382--9491Chr07:24076639..24076663 (25 bp)
TCTGCTACGCCCACGATATGACTCT
LOC_Os07g40130
Os.5095.1.S1_at--381--271Chr07:24076624..24076648 (25 bp)
ATATGACTCTGCTAGCTGCTGCCTG
LOC_Os07g40130
Os.5095.1.S1_at--210--10811Chr07:24076592..24076616 (25 bp)
TTGTACTGTACCACTGAGATCATCT
LOC_Os07g40130
Target Sequence 
AGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTCCACGGCCGACGCCCCCGGCCCCGCCGGCGACGGTGTCGCCGCC
GACTCCACGGGANCCGCAGGGAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCNCCGTGGCGCTCGGCCTCGTCGCCCT
CCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACC
ACATTTTGCGCTGTATTTTGCTCGTCGATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTG
GCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATCGCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCT
TCTTCTCTCTGCTACGCCCACGATATGACTCTGCTAGCTGCTGCCTGCCCGCCCTTGTACTGTACCACTGAGATCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis