Browse Element(s) Details


OsAffx.23027.1.S1_x_at

Description tigr:9635.m04009
TID=OsAffx.23027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4015011/11Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23027.1.S1_x_at--711--2891Chr07:24086617..24086641 (25 bp)
AAGGTGAACGGCGAGGACTGCTTCA
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--1146--951Chr07:24086604..24086628 (25 bp)
AGGACTGCTTCATCCTCAAGCTGTC
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--30--6051Chr07:24086536..24086560 (25 bp)
GAGATCATCCGGCACGTCCTGTTCG
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--591--3872Chr07:24086518..24086542 (25 bp)
CTGTTCGGCTACTTCAGCCAGCGCA
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--561--1771Chr07:24086494..24086518 (25 bp)
ACCGGCCTGATCGTGCACATCGAGG
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--668--8851Chr07:24086487..24086511 (25 bp)
TGATCGTGCACATCGAGGACTCCCA
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--1129--8371Chr07:24086434..24086458 (25 bp)
GGCGACGCCGTCTACTGGGAGACCA
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--653--7151Chr07:24086425..24086449 (25 bp)
GTCTACTGGGAGACCACCATCAGCT
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--1104--391Chr07:24086407..24086431 (25 bp)
ATCAGCTCCGCGCTGGAGGACTACC
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--907--7211Chr07:24086377..24086401 (25 bp)
GTCGAGGGCATCATGATCGCGCACG
LOC_Os07g40150
OsAffx.23027.1.S1_x_at--1010--9291Chr07:24086328..24086352 (25 bp)
TCCGCTTCGGCGAGGCCGCCATGAG
LOC_Os07g40150
Target Sequence 
AAGGTGAACGGCGAGGACTGCTTCATCCTCAAGCTGTCGGCCGACCCGCAGACGCTGAAGCAGCGGAGCGAGGGGCCGGC
GGAGATCATCCGGCACGTCCTGTTCGGCTACTTCAGCCAGCGCACCGGCCTGATCGTGCACATCGAGGACTCCCACCTCA
CCCGCATCCAGCCGCACTCCGGCGGCGACGCCGTCTACTGGGAGACCACCATCAGCTCCGCGCTGGAGGACTACCGCCCC
GTCGAGGGCATCATGATCGCGCACGCGGGGCGCTCCGCCGTCACGCTGTTCCGCTTCGGCGAGGCCGCCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23027.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis