Browse Element(s) Details


OsAffx.28838.1.S1_x_at

Description tigr:9635.m04011
TID=OsAffx.28838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4017011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28838.1.S1_x_at--947--10311Chr07:24099860..24099884 (25 bp)
TTTCTCATCGTCCTGTACGCTTCCA
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--700--9611Chr07:24099864..24099888 (25 bp)
TCATCGTCCTGTACGCTTCCACGAT
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--976--531Chr07:24099887..24099911 (25 bp)
ATCGCCGCATCCATCGGGCGCAGGA
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--689--3531Chr07:24099894..24099918 (25 bp)
CATCCATCGGGCGCAGGATATTGGG
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--589--1751Chr07:24099959..24099983 (25 bp)
ACCTGCATGTCCTTCGCGGCGCTCA
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--405--651Chr07:24099992..24100016 (25 bp)
ATGCAGGCCATGCTCGCGTGCGTCC
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--1150--9091Chr07:24100002..24100026 (25 bp)
TGCTCGCGTGCGTCCTTGAGGAGAA
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--1105--9311Chr07:24100005..24100029 (25 bp)
TCGCGTGCGTCCTTGAGGAGAAGCC
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--1158--8891Chr07:24100101..24100125 (25 bp)
TGAGCTGGATGTGCGTCACCAACTA
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--1044--2571Chr07:24100154..24100178 (25 bp)
AACGTGGCGCCCACCTCGCTGGAGT
LOC_Os07g40170
OsAffx.28838.1.S1_x_at--940--4611Chr07:24100225..24100343 (25 bp)
GCGTACCGTCCGGCGTCACTTGGGT
LOC_Os07g40170
Target Sequence 
TTTCTCATCGTCCTGTACGCTTCCACGATCGCCGCATCCATCGGGCGCAGGATATTGGGGGCGCGCCTCGCCGCGTGGCG
CTCCGACGGCCTGGGCGCCACCTGCATGTCCTTCGCGGCGCTCACGCTCGCGATGCAGGCCATGCTCGCGTGCGTCCTTG
AGGAGAAGCCCGCCGCGGCCGCGGCGGCGGTGGCGAGGCGCCCGGCCAGCGGCGGCCGGCTCCCGTGGCTGGTCGCCGCC
GTGAGCTGGATGTGCGTCACCAACTACTTCGTCGCCTACATCGCCCTCGGCGGCAACGTGGCGCCCACCTCGCTGGAGTG
GACGGCCGCCGGCGTCGCCTCCGCCGCCAACCTCGCCATCGCCACGCGTACCGTCCGGCGTCACTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28838.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis