Browse Element(s) Details


Os.48981.1.S1_at

Description gb:AK107438.1
DB_XREF= gi:32992647
TID=Os.48981.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B02, full insert sequence.
FL= gb:AK107438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4024011/11snakin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48981.1.S1_at--321--3891Chr07:24125193..24125217 (25 bp)
CTGTCTAAGATATGTCTTGTGCTTT
LOC_Os07g40240
Os.48981.1.S1_at--875--10811Chr07:24125209..24125233 (25 bp)
TTGTGCTTTGTCCAGAGTATGCTCT
LOC_Os07g40240
Os.48981.1.S1_at--989--1191Chr07:24125224..24125248 (25 bp)
AGTATGCTCTGATATCGCTCTGATA
LOC_Os07g40240
Os.48981.1.S1_at--708--10151Chr07:24125236..24125260 (25 bp)
TATCGCTCTGATATCTAGGCCGAGT
LOC_Os07g40240
Os.48981.1.S1_at--347--3773Chr07:24125241..24125265 (25 bp)
CTCTGATATCTAGGCCGAGTTTAGT
LOC_Os07g40240
Os.48981.1.S1_at--442--5451Chr07:24125384..24125408 (25 bp)
GAACTAAACACACAAGTTACTTTTG
LOC_Os07g40240
Os.48981.1.S1_at--1070--1371Chr07:24125589..24125613 (25 bp)
AGACCTGGATCATCTGGCTCGAGCA
LOC_Os07g40240
Os.48981.1.S1_at--486--9977Chr11:22624115..22624134 (20 bp)
TACCTCATCTATTTTCATCATGTAT
NONE
Os.48981.1.S1_at--710--171Chr07:24125687..24125711 (25 bp)
ATTTTCATCATGTATGTACCCTCTA
LOC_Os07g40240
Os.48981.1.S1_at--159--8731Chr07:24125701..24125725 (25 bp)
TGTACCCTCTAAATACAAACTTAGG
LOC_Os07g40240
Os.48981.1.S1_at--1082--2451Chr07:24125768..24125792 (25 bp)
AACAAGTGACACCACCATCTATTTC
LOC_Os07g40240
Target Sequence 
CTGTCTAAGATATGTCTTGTGCTTTGTCCAGAGTATGCTCTGATATCGCTCTGATATCTAGGCCGAGTTTAGTTNCAAAT
TTTTTCTTCAAACTTTCAACTTTTTNATCACATCAAAACTTTNNTACAACNCAAATTTCTAATTTTTCCATTATATCGTT
CCAATTTCAACCAAATTTCCAATTTTAGCGTGAACTAAACACACAAGTTACTTTTGATTATTTTTTTTAAGCAACAGAAT
TGAGAATGAGGGTGTGTTTAGTTCACGCTAAAATTGAAAGTTTTATTGAGATTGGAACGATGTAACGGAAAAGTTAGAAG
TTTATGTATATAGAAAATTAAAGTTCTGATGTGATGGAAAACTTGGAGGTTTAAAGAAAAAGTTGGGAACTAAACCAGAC
CTGGATCATCTGGCTCGAGCAGGGGCGGAGCTAGTATATATTAGGGGGGTGCCCAGAAACCTGGTCAAGAAAATTTTTTA
GCTATACCTCATCTATTTTCATCATGTATGTACCCTCTAAATACAAACTTAGGCATCCGCATCAGCTTAAACTTGATCTA
AAGTAGAGTAAATTAAACAAGTGACACCACCATCTATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis