Browse Element(s) Details


Os.55363.1.S1_at

Description gb:AK107947.1
DB_XREF= gi:32993156
TID=Os.55363.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B07, full insert sequence.
FL= gb:AK107947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4025011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55363.1.S1_at--730--3811Chr07:24127509..24127533 (25 bp)
CTGCCGTACAGCCTCTCGAAGGCGG
LOC_Os07g40250
Os.55363.1.S1_at--907--9391Chr07:24127783..24127807 (25 bp)
TCGTCACCGGGCAGAACCACGTCAT
LOC_Os07g40250
Os.55363.1.S1_at--150--1791Chr07:24127788..24127812 (25 bp)
ACCGGGCAGAACCACGTCATCGACG
LOC_Os07g40250
Os.55363.1.S1_at--790--10491Chr07:24127818..24127842 (25 bp)
TTCACGGTCGGGAAGCCGATGGACA
LOC_Os07g40250
Os.55363.1.S1_at--172--2671Chr07:24127830..24127854 (25 bp)
AAGCCGATGGACATGCGGGTTCCAC
LOC_Os07g40250
Os.55363.1.S1_at--50--2111Chr07:24127840..24127864 (25 bp)
ACATGCGGGTTCCACGTTGACGAGC
LOC_Os07g40250
Os.55363.1.S1_at--977--9211Chr07:24127850..24127874 (25 bp)
TCCACGTTGACGAGCCAGAGATGTT
LOC_Os07g40250
Os.55363.1.S1_at--643--6031Chr07:24127867..24127891 (25 bp)
GAGATGTTGTCTGCAAATGCCTCCA
LOC_Os07g40250
Os.55363.1.S1_at--980--8811Chr07:24127871..24127895 (25 bp)
TGTTGTCTGCAAATGCCTCCAGCAA
LOC_Os07g40250
Os.55363.1.S1_at--834--591Chr07:24127883..24127907 (25 bp)
ATGCCTCCAGCAACAGATCAATAAT
LOC_Os07g40250
Os.55363.1.S1_at--1013--351Chr07:24127903..24127927 (25 bp)
ATAATAATTTCTGCATTCTATGGGT
LOC_Os07g40250
Target Sequence 
CTGCCGTACAGCCTCTCGAAGGCGGCGGTGGTGGGCGTGGTGCGGCTGGCGGCGGCCGAGCTGGCGCGCTCCGGCGTGCG
CGTGAACGCCATCTCGCCGCACGCCATCGCGACGCCGCTGCTGGTCCGGTCGCTGGCGAGGATGAACCCGGGGGTCAGCG
ACGAGCAGCTGAAGGAGATGGTGGAGAGGGGGATGAGCGAGCTCCATGGCGCGGTGCTGGAGCTGGAGGACGTGGCGAGG
GCGGCCGTCTACCTGGCGTCCGACGAGGCCAAGTTCGTCACCGGGCAGAACCACGTCATCGACGGCGGGTTCACGGTCGG
GAAGCCGATGGACATGCGGGTTCCACGTTGACGAGCCAGAGATGTTGTCTGCAAATGCCTCCAGCAACAGATCAATAATA
ATTTCTGCATTCTATGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis