Browse Element(s) Details


OsAffx.28839.1.S1_x_at

Description tigr:9635.m04012
TID=OsAffx.28839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4018011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28839.1.S1_x_at--870--1891Chr07:24102075..24102099 (25 bp)
ACGTCGGCCGGCTCGCTGTTCTGCA
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--421--8331Chr07:24102084..24102108 (25 bp)
GGCTCGCTGTTCTGCAGGCTGATGT
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--805--3871Chr07:24102090..24102114 (25 bp)
CTGTTCTGCAGGCTGATGTCGTCGA
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--869--10591Chr07:24102093..24102117 (25 bp)
TTCTGCAGGCTGATGTCGTCGATCG
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--223--5011Chr07:24102209..24102233 (25 bp)
GCAGGCCTTCATCGCGTGCTTCGTG
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--24--7571Chr07:24102295..24102319 (25 bp)
GGGCGGTCGGCGTCTTGACCGGCGT
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--702--8931Chr07:24102310..24102334 (25 bp)
TGACCGGCGTCGTCACCTCGCTGTG
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--491--8371Chr07:24102315..24102339 (25 bp)
GGCGTCGTCACCTCGCTGTGCATCT
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--609--3891Chr07:24102330..24102354 (25 bp)
CTGTGCATCTCCAGCTACTTCTTCA
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--151--3851Chr07:24102390..24102414 (25 bp)
CTGCAGTGGACGATCGCCGCCGTCT
LOC_Os07g40180
OsAffx.28839.1.S1_x_at--1025--9671Chr07:24102439..24102574 (25 bp)
TCACGCCCACCATCATGCGTTTCAT
LOC_Os07g40180
Target Sequence 
ACGTCGGCCGGCTCGCTGTTCTGCAGGCTGATGTCGTCGATCGCCTCCCCGGAGGCCGCCGCCGCCCGTCGGCGATCCGG
CGGCCTGAACGACGCCGTCACCTGCGCGGTCTTCGCGGTGCTCACGGCGGCGTCGCAGGCCTTCATCGCGTGCTTCGTGG
AGGAGGCCGTCGGGCCCGCGCCGCCGGCGACGACGACGAGGGAGGAGAGGTGCGCCGCGTGGGCGGTCGGCGTCTTGACC
GGCGTCGTCACCTCGCTGTGCATCTCCAGCTACTTCTTCACCTACATCGCCGCCGGTGGAGTGGCGCCGACGTCGCTGCA
GTGGACGATCGCCGCCGTCTTCTCCGACGCCAACTTCGTCTTCGTCACGCCCACCATCATGCGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28839.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis