Browse Element(s) Details


OsAffx.16649.1.S1_at

Description tigr:9635.m04008
TID=OsAffx.16649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4014011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16649.1.S1_at--507--4692Chr07:24079385..24079409 (25 bp)
GCGGACTTGTCGTAGCACGTGCTCT
LOC_Os07g40140
OsAffx.16649.1.S1_at--705--6951Chr07:24079396..24079420 (25 bp)
GTAGCACGTGCTCTGTGTCCTCTTC
LOC_Os07g40140
OsAffx.16649.1.S1_at--1141--7451Chr07:24079410..24079434 (25 bp)
GTGTCCTCTTCCACTCTGCATCTGG
LOC_Os07g40140
OsAffx.16649.1.S1_at--583--3032Chr07:24079454..24079478 (25 bp)
AATCGAGGAGCACCATCGTCTCATC
LOC_Os07g40140
OsAffx.16649.1.S1_at--188--511Chr07:24079468..24079492 (25 bp)
ATCGTCTCATCGAGCTGTGGCGGTA
LOC_Os07g40140
OsAffx.16649.1.S1_at--683--9511Chr07:24079472..24079496 (25 bp)
TCTCATCGAGCTGTGGCGGTACGAT
LOC_Os07g40140
OsAffx.16649.1.S1_at--621--6972Chr07:24079490..24079514 (25 bp)
GTACGATGGCCAGCTTGGCCTCGTG
LOC_Os07g40140
OsAffx.16649.1.S1_at--615--8432Chr07:24079506..24079530 (25 bp)
GGCCTCGTGGGCTTGGTGCTACTCT
LOC_Os07g40140
OsAffx.16649.1.S1_at--676--8612Chr07:24079519..24079543 (25 bp)
TGGTGCTACTCTGGCCGGATCTCGA
LOC_Os07g40140
OsAffx.16649.1.S1_at--1127--9452Chr07:24079528..24079552 (25 bp)
TCTGGCCGGATCTCGACAAGAATAT
LOC_Os07g40140
OsAffx.16649.1.S1_at--282--3112Chr07:24079548..24079572 (25 bp)
AATATTAGACGGAGCTCTAACGCCG
LOC_Os07g40140
Target Sequence 
GCGGACTTGTCGTAGCACGTGCTCTGTGTCCTCTTCCACTCTGCATCTGGCCGCCGGCTCGAGCTCACCAATCGAGGAGC
ACCATCGTCTCATCGAGCTGTGGCGGTACGATGGCCAGCTTGGCCTCGTGGGCTTGGTGCTACTCTGGCCGGATCTCGAC
AAGAATATTAGACGGAGCTCTAACGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis