Browse Element(s) Details


Os.53535.1.S1_at

Description gb:AK073173.1
DB_XREF= gi:32983196
TID=Os.53535.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023N06, full insert sequence.
FL= gb:AK073173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g400902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53535.1.S1_at--335--5611NONE
GACAATATTTGGTTCATGGTAGCAC
NONE
Os.53535.1.S1_at--862--8611Chr11:13254041..13254065 (25 bp)
TGGTGGTATTTGATCATTCCCTTCG
NONE
Os.53535.1.S1_at--859--10351Chr11:13254062..13254086 (25 bp)
TTCGTTCCTTTTCTATAGCTTTGGT
NONE
Os.53535.1.S1_at--727--10012Chr11:13254077..13254101 (25 bp)
TAGCTTTGGTTAACCTTCTGGGTGA
NONE
Os.53535.1.S1_at--951--2632Chr11:13254088..13254112 (25 bp)
AACCTTCTGGGTGAGGTGCACTACA
NONE
Os.53535.1.S1_at--566--852Chr11:13256667..13256691 (25 bp)
ATGGAATACCAATGCCTGTTGCGGG
NONE
Os.53535.1.S1_at--1089--6071Chr11:13256723..13256747 (25 bp)
GAGTATTATCATTTTCTCCCTGTAA
NONE
Os.53535.1.S1_at--558--7431Chr11:13256869..13256893 (25 bp)
GTGTTTTATTAAATGGCTGCTTCGT
NONE
Os.53535.1.S1_at--367--8331Chr11:13256883..13256907 (25 bp)
GGCTGCTTCGTTATAACATGGTGTT
NONE
Os.53535.1.S1_at--1029--10531Chr11:13257045..13257069 (25 bp)
TTCATCCCTGTCTTGATTCCTGGAA
NONE
Os.53535.1.S1_at--109--7952Chr11:13257146..13257170 (25 bp)
GGATTTGAACACCATCGATATGATT
NONE
Target Sequence 
GACAATATTTGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAATGAAAAATGGTGGTATTTGATCATTCCCTTC
GTTCCTTTTCTATAGCTTTGGTTAACCTTCTGGGTGAGGTGCACTACAATTCCTTGTATGACATTGAAGTCATAAAATTT
GATGGAATACCAATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGT
AAATTGCAACAAGGTGTTTTATTAAATGGCTGCTTCGTTATAACATGGTGTTCTGTTCATGTGAACTTGTGAAATGGCTG
AGAAGTTCTTTTTAGCTAAAGTGCAGTAGTTGTGCTATGTTGTGAAGAGTGAAATGAAGTATTAGCAAAAGGGTGAGACA
TGGGTTAAAGTTCCAGTGATATGAAATCGTTCATCCCTGTCTTGATTCCTGGAAGATGATATTTTTTTCCAAGTAGCTTT
GATGAAATGTAGCAATGAGTAAATGACCAAAATTGTAATAATCTTTGTATGGATTTGAACACCATCGATATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis