Browse Element(s) Details


Os.50185.1.S1_at

Description gb:AK120003.1
DB_XREF= gi:37989626
TID=Os.50185.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-H11, full insert sequence.
FL= gb:AK120003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4008010/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40040OsAffx.16648.1.S1_at11/117+24033247..24034189expressed protein
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50185.1.S1_at--461--8251Chr07:24053806..24053830 (25 bp)
GGCGGGCACAAGAGGTTCCACTACT
LOC_Os07g40080
Os.50185.1.S1_at--755--2791Chr07:24053815..24053839 (25 bp)
AAGAGGTTCCACTACTTGCATGGCC
LOC_Os07g40080
Os.50185.1.S1_at--4--10531Chr07:24053830..24053854 (25 bp)
TTGCATGGCCCATCGGTGTCGGCGA
LOC_Os07g40080
Os.50185.1.S1_at--147--8391Chr07:24053887..24053911 (25 bp)
GGCGCCGCTTTCGACCTAAACGTGG
LOC_Os07g40080
Os.50185.1.S1_at--986--2371NONE
AAACGTGGCGCCCATCAAGGAAATC
NONE
Os.50185.1.S1_at--138--8051Chr07:24053979..24054003 (25 bp)
GGAGAGCCCTTCACCGGCCAAGAAG
LOC_Os07g40080
Os.50185.1.S1_at--342--1871Chr07:24054006..24054030 (25 bp)
ACGACGCCGGCCAGGATGAGATCCT
LOC_Os07g40080
Os.50185.1.S1_at--851--60322Chr12:15324269..15324288 (20 bp)
GAGATCCTCCACGTTAGTATATATG
NONE
Os.50185.1.S1_at--491--2351Chr07:24054112..24054136 (25 bp)
AAAGCAGAGGCTGCTCACGTCGTCA
LOC_Os07g40080
Os.50185.1.S1_at--822--4651Chr07:24054138..24054162 (25 bp)
GCGTGTGCTCCGATCGATAACTTTA
LOC_Os07g40080
Os.50185.1.S1_at--892--5631Chr07:24054217..24054241 (25 bp)
GACAGAGATTAAACACGGGCTCGAT
LOC_Os07g40080
Target Sequence 
GGCGGGCACAAGAGGTTCCACTACTTGCATGGCCCATCGGTGTCGGCGACGGTCTCCAGTGCAGCGACGGCGGCGAGCGT
GGGCGCCGCTTTCGACCTAAACGTGGCGCCCATCAAGGAAATCGCCGGCGAGCAACGACGGTGCGGCGAGGAGGCCGACG
ACGACGATGAGGCGGAGAGCCCTTCACCGGCCAAGAAGCCACGACGCCGGCCAGGATGAGATCCTCCACGTTAGTATATA
TGAAGTACTAACCATCCAATTATATACATATAGCTCGTTGAGCATGTATGTATACAACCGGTAGAGAAAGCAGAGGCTGC
TCACGTCGTCACGCGTGTGCTCCGATCGATAACTTTAGGGTGTGCAATTGTAAATAAAAAAAGGGAGATTCGGAGGGAAA
GACGTCCTCCAGACAGAGATTAAACACGGGCTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis