Browse Element(s) Details


OsAffx.5582.1.S1_at

Description tigr:9635.m04006
TID=OsAffx.5582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4012011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40050OsAffx.10632.1.S1_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40050OsAffx.20387.1.S1_x_at1/117+24038539..24045634retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40060OsAffx.31069.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40060Os.53479.1.S1_x_at1/117+24046272..24049148retrotransposon protein, putative, unclassified
LOC_Os07g40070OsAffx.28834.1.S1_at9/117+24051363..24052774hypothetical protein
LOC_Os07g40080Os.50185.1.S1_at10/117+24053357..24054250Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40090OsAffx.28835.1.S1_at11/117+24058620..24060024hypothetical protein
LOC_Os07g40090Os.53535.1.S1_at2/117+24058620..24060024hypothetical protein
LOC_Os07g40100NANA7+24065412..24065870Pollen proteins Ole e I family protein
LOC_Os07g40110OsAffx.28836.1.S1_at11/117+24068369..24069003hypothetical protein
LOC_Os07g40120OsAffx.5582.1.S1_at11/117+24069486..24071840pentatricopeptide, putative, expressed
LOC_Os07g40130Os.5095.1.S1_at11/117+24076272..24078295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40140OsAffx.16649.1.S1_at11/117+24079263..24079985hypothetical protein
LOC_Os07g40150OsAffx.23027.1.S1_x_at11/117+24085625..24088031Lipase, putative, expressed
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5582.1.S1_at--374--2151Chr07:24071240..24071264 (25 bp)
ACAGAAGCGGTGTTCATTGGATATT
LOC_Os07g40120
OsAffx.5582.1.S1_at--620--6731Chr07:24071268..24071292 (25 bp)
GTTCTTAATGCCATGGTTTCCATAT
LOC_Os07g40120
OsAffx.5582.1.S1_at--717--5571Chr07:24071346..24071370 (25 bp)
GAAAGTGCTATCAACCTCAGTGCTG
LOC_Os07g40120
OsAffx.5582.1.S1_at--494--1131Chr07:24071364..24071388 (25 bp)
AGTGCTGCTACCTACAATAGCTTGA
LOC_Os07g40120
OsAffx.5582.1.S1_at--647--371Chr07:24071445..24071469 (25 bp)
ATCAAGTCAAGTGGTGTGCGCCCTG
LOC_Os07g40120
OsAffx.5582.1.S1_at--514--2471Chr07:24071484..24071508 (25 bp)
AACACTGTGATCTATGCATATGGAA
LOC_Os07g40120
OsAffx.5582.1.S1_at--432--6791Chr07:24071605..24071629 (25 bp)
GTTATGTCTCCAACTCAATGTTTGA
LOC_Os07g40120
OsAffx.5582.1.S1_at--365--6791Chr07:24071642..24071666 (25 bp)
GTTAGTACGCTATATGGTCACTCAA
LOC_Os07g40120
OsAffx.5582.1.S1_at--398--7831Chr07:24071657..24071681 (25 bp)
GGTCACTCAAGGTTGCAAGCCCAAT
LOC_Os07g40120
OsAffx.5582.1.S1_at--885--231Chr07:24071745..24071769 (25 bp)
ATATTTGTTAGCAACCTTCCTCAGC
LOC_Os07g40120
OsAffx.5582.1.S1_at--828--10671Chr07:24071761..24071785 (25 bp)
TTCCTCAGCTTCATCCTGGATATTC
LOC_Os07g40120
Target Sequence 
ACAGAAGCGGTGTTCATTGGATATTAATGTTCTTAATGCCATGGTTTCCATATATGGGAAAAACAGGATGGTCAGGAAGG
TTGAGAAGATTCTTTCACTGATGAAGGAAAGTGCTATCAACCTCAGTGCTGCTACCTACAATAGCTTGATGCATATGTAT
TCTCGTTTAGGTGATTGTGAAAAGTGTGAAAATATTCTCACTGAGATCAAGTCAAGTGGTGTGCGCCCTGATAGATATTC
TTATAACACTGTGATCTATGCATATGGAAGAAAAGGACAGATGAAAGAAGCATCAAGATTGTTCTCTGAGATGAAATGTT
CAGGTCTGAAACCAGATGTTGTAACATACAATATTTTTGTCAAGAGTTATGTCTCCAACTCAATGTTTGAGGAAGCTATT
GAGTTAGTACGCTATATGGTCACTCAAGGTTGCAAGCCCAATGAGAGAACTTACAATTCAATAGTGGAGGGCTATTGTAG
GAATGGAAAGTTGACTGATGCCAAAATATTTGTTAGCAACCTTCCTCAGCTTCATCCTGGATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis