Browse Element(s) Details


Os.17370.3.S1_at

Description gb:AK120245.1
DB_XREF= gi:37989868
TID=Os.17370.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J21, full insert sequence.
FL= gb:AK120245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g155508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15510OsAffx.26038.1.S1_at11/114+8413130..8415433hypothetical protein
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17370.3.S1_at--762--2391Chr04:8441282..8441306 (25 bp)
AAACTATGCTGTTATCTATCTTGAT
LOC_Os04g15550
Os.17370.3.S1_at--151--2992Chr04:8441399..8441423 (25 bp)
AATGTGATGCCTGCTAATGCACCTC
LOC_Os04g15550
Os.17370.3.S1_at--131--9091Chr04:8441410..8441434 (25 bp)
TGCTAATGCACCTCATCAATTTGTT
LOC_Os04g15550
Os.17370.3.S1_at--42--6651NONE
GTTGTTGTTCATGTCATAGTGGCAA
NONE
Os.17370.3.S1_at--519--3512Chr04:8441550..8441574 (25 bp)
CATGTATACTCTTTGCACTTGTCTA
LOC_Os04g15550
Os.17370.3.S1_at--165--3152Chr04:8441574..8441598 (25 bp)
AATTACATTGCCAGTGTGCCTCATA
LOC_Os04g15550
Os.17370.3.S1_at--305--7292Chr04:8441589..8441613 (25 bp)
GTGCCTCATAAACACAGTTGCATGT
LOC_Os04g15550
Os.17370.3.S1_at--1077--1231NONE
AGTTGCATGTACACACGCATATATA
NONE
Os.17370.3.S1_at--391--5532Chr04:8441632..8441656 (25 bp)
GAAACACGCGTCTACCGTTCAAAGT
LOC_Os04g15550
Os.17370.3.S1_at--1156--6691NONE
GTTCAAAGTAATTGGATCTGGTCCG
NONE
Os.17370.3.S1_at--202--6411Chr04:8441662..8441686 (25 bp)
GATCTGGTCCGGTTATATGTTATTC
LOC_Os04g15550
Target Sequence 
AAACTATGCTGTTATCTATCTTGATAATTAGTTCCATGTCCTTTGCTTCAATAGCAGCAATGCAGTTTCAGCTTCTCCCA
AGGAGAAAGCTGTAGTAAAAAAAANNANNANAAAGTAATGTGATGCCTGCTAATGCACCTCATCAATTTGTTGGCACTCT
GCCGCCTGGAACCTGAAGATTATATAGTTGTTGTTCATGTCATAGTGGCAATGTTTACTCTCCCTATATTATTCCAGTGT
TTGNAAACACANNTCTATATCGTAAGNCATGTATACTCTTTGCACTTGTCTAATTACATTGCCAGTGTGCCTCATAAACA
CAGTTGCATGTACACACGCATATATATTAGAAACACGCGTCTACCGTTCAAAGTAATTGGATCTGGTCCGGTTATATGTT
ATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17370.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis