Browse Element(s) Details


Os.8531.1.S1_at

Description gb:AK059943.1
DB_XREF= gi:32969961
TID=Os.8531.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G02, full insert sequence.
FL= gb:AK104227.1 gb:AK060052.1 gb:AK059943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1569011/11DSBA-like thioredoxin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15640OsAffx.13827.1.S1_at10/114+8484101..8485321hypothetical protein
LOC_Os04g15650Os.49817.1.S1_at11/114+8487803..8490905Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.13825.1.S1_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.24234.1.S1_x_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15670NANA4+8498474..8499100expressed protein
LOC_Os04g15680NANA4+8499387..8499710hypothetical protein
LOC_Os04g15690Os.8531.1.S1_at11/114+8508353..8513023DSBA-like thioredoxin domain containing protein, expressed
LOC_Os04g15730NANA4+8532756..8533172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15740OsAffx.13829.1.S1_at11/114+8535345..8535743hypothetical protein
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8531.1.S1_at--769--6451Chr04:8512151..8512175 (25 bp)
GATCAAGCCACACGAATTTCTTTCA
LOC_Os04g15690
Os.8531.1.S1_at--899--10551Chr04:8512168..8512542 (25 bp)
TTCTTTCAAGTATGGTTGCGCACGA
LOC_Os04g15690
Os.8531.1.S1_at--1009--7611Chr04:8512551..8512575 (25 bp)
GGGAACACCGTACTTCTTTGTGAAT
LOC_Os04g15690
Os.8531.1.S1_at--630--10351Chr04:8512586..8512610 (25 bp)
TTATTAGTGACTCTGGTTCCCCACT
LOC_Os04g15690
Os.8531.1.S1_at--468--3191Chr04:8512631..8512655 (25 bp)
CAATCCTTGATCCATTGGTTGGCAA
LOC_Os04g15690
Os.8531.1.S1_at--557--7431Chr04:8512666..8512690 (25 bp)
GTGTTTCAACTAAAGTCCTCTGCCT
LOC_Os04g15690
Os.8531.1.S1_at--499--2851Chr04:8512678..8512702 (25 bp)
AAGTCCTCTGCCTGGTGTTAAATAC
LOC_Os04g15690
Os.8531.1.S1_at--533--2291Chr04:8512804..8512828 (25 bp)
AAAGGGCAACCCTACTCTAATGACA
LOC_Os04g15690
Os.8531.1.S1_at--775--6271Chr04:8512885..8512909 (25 bp)
GATGTAGCTCTCACATACAATGGTA
LOC_Os04g15690
Os.8531.1.S1_at--17--6911Chr04:8512907..8512931 (25 bp)
GTATCCCAGTGTGCTACCAACAAGA
LOC_Os04g15690
Os.8531.1.S1_at--472--1531Chr04:8512996..8513020 (25 bp)
AGCAGTGTTACATTCCTTGGTTTTC
LOC_Os04g15690
Target Sequence 
GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCAT
CCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGT
AGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAGACAAATAAGCTTGNCGCAAAAACAGTAT
GATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTC
TAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACAT
ACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAA
CTACATTGATAAGGAAGCAGTGTTACATTCCTTGGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis