Browse Element(s) Details


OsAffx.13829.1.S1_at

Description tigr:9632.m01404
TID=OsAffx.13829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1574011/11hypothetical protein
LOC_Os04g157607/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15690Os.8531.1.S1_at11/114+8508353..8513023DSBA-like thioredoxin domain containing protein, expressed
LOC_Os04g15730NANA4+8532756..8533172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15740OsAffx.13829.1.S1_at11/114+8535345..8535743hypothetical protein
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13829.1.S1_at--1060--191Chr04:8535689..8535713 (25 bp)
ATTTCCCTCATGGTGCTATGTTTAG
LOC_Os04g15740
OsAffx.13829.1.S1_at--245--3572Chr04:8545471..8545495 (25 bp)
CATATCAGGGAAGGTTTCAGCTACT
LOC_Os04g15760
OsAffx.13829.1.S1_at--846--10512Chr04:8545456..8545480 (25 bp)
TTCAGCTACTGAAGAGTGTCATGCT
LOC_Os04g15760
OsAffx.13829.1.S1_at--436--7432Chr04:8545441..8545465 (25 bp)
GTGTCATGCTGCACCAATCACAGAA
LOC_Os04g15760
OsAffx.13829.1.S1_at--1096--3271Chr04:8535474..8535498 (25 bp)
CACAGAAGTACCAAAACCATGCGTT
LOC_Os04g15740
OsAffx.13829.1.S1_at--418--2371Chr04:8535461..8535485 (25 bp)
AAACCATGCGTTGATGCAACCTGCA
LOC_Os04g15740
OsAffx.13829.1.S1_at--962--5152Chr04:8545395..8545419 (25 bp)
GCAACCTGCAAAGCGATATGCTCAG
LOC_Os04g15760
OsAffx.13829.1.S1_at--520--4632Chr04:8545383..8545407 (25 bp)
GCGATATGCTCAGATAAGTACCAAA
LOC_Os04g15760
OsAffx.13829.1.S1_at--540--3292Chr04:8545357..8545381 (25 bp)
CAAAGGCGAGTGCTTCAGTACTGAT
LOC_Os04g15760
OsAffx.13829.1.S1_at--885--6251Chr04:8535386..8535410 (25 bp)
GATGGGCTTTATTACTGCAACTTTT
LOC_Os04g15740
OsAffx.13829.1.S1_at--1122--10452Chr04:8545324..8545348 (25 bp)
TTACTGCAACTTTTGTGCGAATAGC
LOC_Os04g15760
Target Sequence 
ATTTCCCTCATGGTGCTATGTTTAGACATATCAGGGAAGGTTTCAGCTACTGAAGAGTGTCATGCTGCACCAATCACAGA
AGTACCAAAACCATGCGTTGATGCAACCTGCAAAGCGATATGCTCAGATAAGTACCAAAGCAAAGGCGAGTGCTTCAGTA
CTGATGGGCTTTATTACTGCAACTTTTGTGCGAATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis