Browse Element(s) Details


OsAffx.3799.1.S1_at

Description tigr:9632.m01408
TID=OsAffx.3799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1578011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15730NANA4+8532756..8533172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15740OsAffx.13829.1.S1_at11/114+8535345..8535743hypothetical protein
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3799.1.S1_at--826--2151Chr04:8551363..8551387 (25 bp)
ACAGCTACGGCGGTCCCAGCTAGGG
LOC_Os04g15780
OsAffx.3799.1.S1_at--813--5871Chr04:8551332..8551356 (25 bp)
GAGCCGAGGATAGCGACGCGCCTCT
LOC_Os04g15780
OsAffx.3799.1.S1_at--94--4671Chr04:8551298..8551322 (25 bp)
GCGGGCCGAACGAGCCAAGCGACCT
LOC_Os04g15780
OsAffx.3799.1.S1_at--212--9151Chr04:8551225..8551249 (25 bp)
TGCGACCTCTGGCTCTAACGCTGCT
LOC_Os04g15780
OsAffx.3799.1.S1_at--371--4011Chr04:8551124..8551148 (25 bp)
CGTCGCCATCCGTGAGGTGGTGTTC
LOC_Os04g15780
OsAffx.3799.1.S1_at--430--3731Chr04:8550996..8551020 (25 bp)
CTCAAGACGTGGTGGGTTCGTCGAT
LOC_Os04g15780
OsAffx.3799.1.S1_at--1040--8611Chr04:8550984..8551008 (25 bp)
TGGGTTCGTCGATTGACCGCGGAAA
LOC_Os04g15780
OsAffx.3799.1.S1_at--636--10751Chr04:8550972..8550996 (25 bp)
TTGACCGCGGAAACGAAGGCGATGC
LOC_Os04g15780
OsAffx.3799.1.S1_at--410--7831Chr04:8550947..8550971 (25 bp)
GGTCAAGGATGAGCGGCACACCAGT
LOC_Os04g15780
OsAffx.3799.1.S1_at--141--5131Chr04:8550932..8550956 (25 bp)
GCACACCAGTGGTTGCGAGCCTCCT
LOC_Os04g15780
OsAffx.3799.1.S1_at--451--6251Chr04:8550883..8550907 (25 bp)
GATGGTCGAAGAGCCTTCGTGTCCT
LOC_Os04g15780
Target Sequence 
ACAGCTACGGCGGTCCCAGCTAGGGGTGTCGGAGCCGAGGATAGCGACGCGCCTCTGCCTTCGCTGCGGGCCGAACGAGC
CAAGCGACCTTCGCCTCTGCCACCGGCGCCCGACCGAGATCCGCCTCGTCGGCGCTCGTGCGACCTCTGGCTCTAACGCT
GCTGCCAGCGCCCGAGCGAGCCCGACCTCCGCCGCCGCTGCCAGCGCCCTAGCGAGTTCTGCCTGCCCCCACCCTCACCC
GTCGCCATCCGTGAGGTGGTGTTCGTCGGAGATGCGGCGGCCGTTCACGACGCTGGAGGGGGAGAGTCGCGGGAGGACCT
CCACCGCCGGTCGCGGAGAAGAAGGAAGAAGGAGGGTCGCGAGGGAGCTCAAGACGTGGTGGGTTCGTCGATTGACCGCG
GAAACGAAGGCGATGCGGTCAAGGATGAGCGGCACACCAGTGGTTGCGAGCCTCCTCGCGGCGGACGTGGAGGCAGGGAA
GATGGTCGAAGAGCCTTCGTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis