Browse Element(s) Details


Os.6166.1.S1_at

Description gb:AK105031.1
DB_XREF= gi:32990240
TID=Os.6166.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A07, full insert sequence.
FL= gb:AK105031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1579010/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15740OsAffx.13829.1.S1_at11/114+8535345..8535743hypothetical protein
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6166.1.S1_at--884--8931Chr04:8564912..8564936 (25 bp)
TGACTGGTCTTCGTGTTGTGTTCGA
LOC_Os04g15790
Os.6166.1.S1_at--776--2271Chr04:8565076..8565100 (25 bp)
AAATCCTCTTTCTATCAATTCACGG
LOC_Os04g15790
Os.6166.1.S1_at--289--7731Chr04:8565158..8565182 (25 bp)
GGTGGGAACCCAGCAAGCGTTACAC
LOC_Os04g15790
Os.6166.1.S1_at--781--1631Chr04:8565173..8565197 (25 bp)
AGCGTTACACAGTTGAGACCCCTTA
LOC_Os04g15790
Os.6166.1.S1_at--235--10051Chr04:8565231..8565255 (25 bp)
TAGTCTTCAGGTTTCTTTTGGTCAA
LOC_Os04g15790
Os.6166.1.S1_at--249--10411Chr04:8565246..8565270 (25 bp)
TTTTGGTCAATTTGGCCGCTCTGAT
LOC_Os04g15790
Os.6166.1.S1_at--942--331Chr04:8565377..8565401 (25 bp)
ATACACGTCCTGTAAATACCGTCCT
LOC_Os04g15790
Os.6166.1.S1_at--810--6351Chr04:8565440..8565464 (25 bp)
GATGCCGATTTTTGATGGCTCACAC
LOC_Os04g15790
Os.6166.1.S1_at--938--851Chr04:8565454..8565478 (25 bp)
ATGGCTCACACTGTACGAGTTCCGT
LOC_Os04g15790
Os.6166.1.S1_at--784--9571Chr04:8565485..8565509 (25 bp)
TCTTCGTTTTTTCCTTGTCAATTAT
LOC_Os04g15790
Os.6166.1.S1_at--604--2252Chr04:8565526..8565550 (25 bp)
AAATTATCTCCTTTGTCTGGATCAA
NONE
Target Sequence 
TGACTGGTCTTCGTGTTGTGTTCGATCGAGAAAGGAAAATTCTTGGTTGGAAGAAATTCAATTGTTATGACACTGATAGT
TCAAATCCTCTTTCTATCAATTCACGGAATTCTTCAGGTTTCTCCCCTTCAGCACCTGAGAATTACNCCCCCGAGGAAAC
AAAGGGTGGGAACCCAGCAAGCGTTACACAGTTGAGACCCCTTAGTAATTCCAACCCAGTAATGTGGTATGATAGTTTAG
TCTTCAGGTTTCTTTTGGTCAATTTGGCCGCTCTGATCCTCTTCTAATTTGTTTCGGGATGACCTGAATGTAAATTAGTT
ATCACGATTACTGTAGATGCACTAGAAGCTGACTAGAGAATACANCATAGAGAACAGTACTGTATACACGTCCTGTAAAT
ACCGTCCTTTGTNNNGNTCGACAATATTGTGTCAAAAGCAATTAATTTGTGATGCCGATTTTTGATGGCTCACACTGTAC
GAGTTCCGTTTTCGGTCTTCGTTTTTTCCTTGTCAATTATACTATCTTTCCTTATAAAATTATCTCCTTTGTCTGGATCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis