Browse Element(s) Details


Os.2696.1.S1_at

Description gb:Y07782.1
DB_XREF= gi:2924246
GEN=RiExA
TID=Os.2696.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2696 (NCBI UniGene Cluster)
DEF=Oryza sativa expansin (Os-EXP-1) mRNA, complete cds.
PROD=expansin
FL= gb:AK069548.1 gb:Y07782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1584011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15880OsAffx.13831.1.S1_at11/114+8594274..8597937hypothetical protein
LOC_Os04g15880OsAffx.8160.1.S1_x_at1/114+8594274..8597937hypothetical protein
LOC_Os04g15890OsAffx.31869.5.S1_x_at2/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15890Os.45173.1.S1_x_at1/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2696.1.S1_at--777--1731Chr04:8579507..8579531 (25 bp)
ACCATCAACGGCAGGGACTACTTCG
LOC_Os04g15840
Os.2696.1.S1_at--804--9211Chr04:8579567..8579591 (25 bp)
TCCATCCAGTCGGTGTCGATCAAGG
LOC_Os04g15840
Os.2696.1.S1_at--452--1371Chr04:8579667..8579691 (25 bp)
AGAGCCTGTCGTTCAAGGTCACCAG
LOC_Os04g15840
Os.2696.1.S1_at--846--5831Chr04:8579761..8579785 (25 bp)
GACCTCACAGCAGTTCTCTTAAGTA
LOC_Os04g15840
Os.2696.1.S1_at--838--5871Chr04:8579837..8579861 (25 bp)
GAGCGTATATTATCATCGGCGTCGG
LOC_Os04g15840
Os.2696.1.S1_at--91--2031Chr04:8579885..8579909 (25 bp)
ACTAGTAGCTGTTTGGGTTGCCCAC
LOC_Os04g15840
Os.2696.1.S1_at--169--2231Chr04:8579908..8579932 (25 bp)
ACAAGTTTGGAGCATGCGCGCACAA
LOC_Os04g15840
Os.2696.1.S1_at--1098--3211Chr04:8579930..8579954 (25 bp)
CAAGTGTTTGGTGTGGCGAGCTATA
LOC_Os04g15840
Os.2696.1.S1_at--323--2171Chr04:8579976..8580000 (25 bp)
ACACCTGCTTTTTTCAATGCGAATT
LOC_Os04g15840
Os.2696.1.S1_at--488--7031Chr04:8580017..8580041 (25 bp)
GTACAGTTTGCGAGGTGCTTGCCAA
LOC_Os04g15840
Os.2696.1.S1_at--11--531Chr04:8580041..8580065 (25 bp)
ATCGATGATCGGCATGCTTTACTGT
LOC_Os04g15840
Target Sequence 
ACCATCAACGGCAGGGACTACTTCGAGCTGGTGCTCGTCTCCAACGTCGGCGGCGTCGGCTCCATCCAGTCGGTGTCGAT
CAAGGGGTCGAGGACCGGGTGGATGGCCATGTCCAGGAATTGGGGCGTCAACTGGCAGTCCAACGCCTACCTCGACGGCC
AGAGCCTGTCGTTCAAGGTCACCAGCAGCGACGGCCAGACGCTCACCTTCCTCGACGTCGCCCCGGCGGGCTGGACGTTC
GGCCAGACCTTCTCGACCTCACAGCAGTTCTCTTAAGTAATTAAATATTAATGAGTTATTACTGGTCCATTCATATATGT
GTTTAATTCCGAGCGTATATTATCATCGGCGTCGGCGTGTAAAGACTAAAGATATATTACTAGTAGCTGTTTGGGTTGCC
CACAAGTTTGGAGCATGCGCGCACAAGTGTTTGGTGTGGCGAGCTATATATATGATTTGCAAGCTAAGGACACCTGCTTT
TTTCAATGCGAATTAAAACGGTATATATATGTACAGTTTGCGAGGTGCTTGCCAATCGATGATCGGCATGCTTTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis