Browse Element(s) Details


OsAffx.13831.1.S1_at

Description tigr:9632.m01418
TID=OsAffx.13831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1588011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15880OsAffx.13831.1.S1_at11/114+8594274..8597937hypothetical protein
LOC_Os04g15880OsAffx.8160.1.S1_x_at1/114+8594274..8597937hypothetical protein
LOC_Os04g15890OsAffx.31869.5.S1_x_at2/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15890Os.45173.1.S1_x_at1/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.20730.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.10020.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.20733.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15910OsAffx.26041.4.S1_s_at11/114+8613010..8616409hAT family dimerisation domain containing protein
LOC_Os04g15920Os.6089.1.S1_at11/114+8617157..8619188mannitol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13831.1.S1_at--372--8971Chr04:8595311..8595335 (25 bp)
TGAAGAAAGCAGTTCGCCAACATCG
LOC_Os04g15880
OsAffx.13831.1.S1_at--875--4391Chr04:8595296..8595320 (25 bp)
GCCAACATCGCTATCACCTGAAGAG
LOC_Os04g15880
OsAffx.13831.1.S1_at--128--10651Chr04:8595095..8595279 (25 bp)
TTCCCGCTCCATTTGAGAAACTCTG
LOC_Os04g15880
OsAffx.13831.1.S1_at--1088--6971Chr04:8595039..8595063 (25 bp)
GTACCATCATACAACTGGCTCACGC
LOC_Os04g15880
OsAffx.13831.1.S1_at--939--9671Chr04:8595020..8595044 (25 bp)
TCACGCAGCTACAAGGTGCATTTGG
LOC_Os04g15880
OsAffx.13831.1.S1_at--1091--5571Chr04:8594701..8594725 (25 bp)
GAAAGGCTACACACCAGATGTCCAG
LOC_Os04g15880
OsAffx.13831.1.S1_at--347--1311Chr04:8594565..8594710 (25 bp)
AGATGTCCAGCTTGCTATTGATGAA
LOC_Os04g15880
OsAffx.13831.1.S1_at--884--651Chr04:8594545..8594569 (25 bp)
ATGAAGAGGCCCCTTCCATGACCGA
LOC_Os04g15880
OsAffx.13831.1.S1_at--60--10051Chr04:8594518..8594542 (25 bp)
TAGTTGCTGGTGTTCTTGCTGAGAA
LOC_Os04g15880
OsAffx.13831.1.S1_at--599--5551Chr04:8594487..8594511 (25 bp)
GAAACCCACATTTCTGCAGACTGTG
LOC_Os04g15880
OsAffx.13831.1.S1_at--678--7991Chr04:8594400..8594424 (25 bp)
GGATGACCTCAAATCACAAGTGCAA
LOC_Os04g15880
Target Sequence 
TGAAGAAAGCAGTTCGCCAACATCGCTATCACCTGAAGAGGATTTTCTTTAATCCTTTCCCGCTCCATTTGAGAAACTCT
GAACTGAACAAAACCAACCGAAGCAAGGTCAAGTACCATCATACAACTGGCTCACGCAGCTACAAGGTGCATTTGGAAAA
TTTGGGAGACAAGTACAAAGACCAGGAACTTGATGCAGTGGATATGTTCAAGGAGTGCCACTACAGTAAAAAGAAAGGCT
ACACACCAGATGTCCAGCTTGCTATTGATGAAATGGAAAACAAGCTGTCTGAACATGCAGAAGATGAAGAGGCCCCTTCC
ATGACCGAGGTAGTTGCTGGTGTTCTTGCTGAGAAGACCAAGAAACCCACATTTCTGCAGACTGTGGGGATTCAGAGCAG
AAAGAAAGGCACACTTAAAGAGCAACTAGCTGCAGAGAAGTTGGCAAAGGATGACCTCAAATCACAAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis