Browse Element(s) Details


Os.6089.1.S1_at

Description gb:AK071484.1
DB_XREF= gi:32981507
TID=Os.6089.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091M10, full insert sequence.
FL= gb:AK099270.1 gb:AK071484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1592011/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15880OsAffx.13831.1.S1_at11/114+8594274..8597937hypothetical protein
LOC_Os04g15880OsAffx.8160.1.S1_x_at1/114+8594274..8597937hypothetical protein
LOC_Os04g15890OsAffx.31869.5.S1_x_at2/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15890Os.45173.1.S1_x_at1/114+8600142..8607827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.20730.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.10020.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15900OsAffx.20733.1.S1_x_at1/114+8608716..8609135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15910OsAffx.26041.4.S1_s_at11/114+8613010..8616409hAT family dimerisation domain containing protein
LOC_Os04g15920Os.6089.1.S1_at11/114+8617157..8619188mannitol dehydrogenase, putative, expressed
LOC_Os04g15930OsAffx.5782.1.S1_at1/114+8630426..8634937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15930OsAffx.15648.1.S1_at1/114+8630426..8634937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15944NANA4+8637127..8643326retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6089.1.S1_at--226--9411Chr04:8618274..8618298 (25 bp)
TCGTCAGCACCGACCAGAAGCAGAT
LOC_Os04g15920
Os.6089.1.S1_at--1008--8931Chr04:8617781..8617805 (25 bp)
TGACGAGGAGCCTTGACTACATCAT
LOC_Os04g15920
Os.6089.1.S1_at--539--8631Chr04:8617730..8617754 (25 bp)
TGGGTCCGATCCTGGAGCTGCTCAA
LOC_Os04g15920
Os.6089.1.S1_at--763--10651Chr04:8617544..8617671 (25 bp)
TTCCCTCTCATCTTCGGTAAGAGGA
LOC_Os04g15920
Os.6089.1.S1_at--246--511Chr04:8617436..8617460 (25 bp)
ATCGAGATCGTGTCCACGGACAGGA
LOC_Os04g15920
Os.6089.1.S1_at--864--5651Chr04:8617418..8617442 (25 bp)
GACAGGATCAACGATGCGCTCGCCA
LOC_Os04g15920
Os.6089.1.S1_at--849--3571Chr04:8617314..8617338 (25 bp)
CATATTGCTACCTAGTACCAACCTC
LOC_Os04g15920
Os.6089.1.S1_at--451--3251Chr04:8617296..8617320 (25 bp)
CAACCTCCATGCCTTTCTTAATTTA
LOC_Os04g15920
Os.6089.1.S1_at--644--171Chr04:8617271..8617295 (25 bp)
ATTTATTGGAGGCTCTGCACGCAGA
LOC_Os04g15920
Os.6089.1.S1_at--640--6591Chr04:8617218..8617242 (25 bp)
GTTGGCCACGTGAAGTAACTGTACG
LOC_Os04g15920
Os.6089.1.S1_at--1009--1831Chr04:8617196..8617220 (25 bp)
ACGCACTTTGTACTTATTCGAGAAA
LOC_Os04g15920
Target Sequence 
TCGTCAGCACCGACCAGAAGCAGATGCNGGCTATGACGAGGAGCCTTGACTACATCATTGACACGGTCGNGGCGACGCAC
TCTCTGGGTCCGATCCTGGAGCTGCTCAAGGTCAACGGCAANCTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCT
CCCTTCCTTCCCTCTCATCTTCGGTAAGAGGACGGTGAGTGGGAGCATGACGGGTGGGATGAAGGAGACGCAGGAGATGA
TGGACATTTGCGGGGAGCACAACATCACCTGCGACATCGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGG
TTGGCGCGCAACGACGTCCGCTACCGCTTCGTCATCAACGTTGGGGGCGACTCCAAGCTCTAGANTCATGCTACTATCAT
ATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAG
CTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis