Browse Element(s) Details


Os.49490.1.S1_at

Description gb:AK067952.1
DB_XREF= gi:32977970
TID=Os.49490.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127E17, full insert sequence.
FL= gb:AK067952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g158201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15880OsAffx.13831.1.S1_at11/114+8594274..8597937hypothetical protein
LOC_Os04g15880OsAffx.8160.1.S1_x_at1/114+8594274..8597937hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49490.1.S1_at--663--331Chr01:18913145..18913169 (25 bp)
ATAAAAATGCATGCCGCCTACGTTA
NONE
Os.49490.1.S1_at--869--4451Chr01:18913160..18913184 (25 bp)
GCCTACGTTAATTTCTACTGTGCAG
NONE
Os.49490.1.S1_at--536--6931Chr01:18913213..18913237 (25 bp)
GTAGGTAGCAATTCACGTGATGCAT
NONE
Os.49490.1.S1_at--152--5512Chr04:8571980..8572003 (24 bp)
GAACACATAGCTCTATTGTGCTTAT
LOC_Os04g15820
Os.49490.1.S1_at--1090--10211Chr01:18913288..18913312 (25 bp)
TATTCTTCTCTGTTGGAGCAGGCCT
NONE
Os.49490.1.S1_at--259--8551Chr01:18913301..18913325 (25 bp)
TGGAGCAGGCCTTCTATGGGTCTTG
NONE
Os.49490.1.S1_at--1051--2891Chr01:18914151..18914174 (24 bp)
AAGGCAAGCATGAAGCATCTATGGT
NONE
Os.49490.1.S1_at--1087--10171Chr01:18914570..18914594 (25 bp)
TATATATCGACGTGCAAGATGTGCT
NONE
Os.49490.1.S1_at--1113--2791Chr01:18914585..18914609 (25 bp)
AAGATGTGCTTTGCACGTGCACGCT
NONE
Os.49490.1.S1_at--205--2271Chr01:18914625..18914649 (25 bp)
AAATCAAGTTTGTCCTCGCACGTTG
NONE
Os.49490.1.S1_at--1099--4111Chr01:18914641..18914665 (25 bp)
CGCACGTTGTCGCAGGGACCAGAAA
NONE
Target Sequence 
ATAAAAATGCATGCCGCCTACGTTAATTTCTACTGTGCAGTGACAAAGCTTTGATTTGAGACACTATTGTAGGTAGCAAT
TCACGTGATGCATTGCATTACTTTTTTTTTTTTACTGATGAACACATAGCTCTATTGTGCTTATATTCTTCTCTGTTGGA
GCAGGCCTTCTATGGGTCTTGGATGTGCTCATCAACTGTTTTGATCAGTGAAGGGGATGCTGTTAGTGATGGAGTTAGAA
CAAGACATAAAGGCAAGCATGAAGCATCTATGGTGCTTGAGACCTACTTTCTTATTACATCACCCAATTTTGCTTGAACA
AGAGGCATGCAAAACATTTGAAGGATGGATCATGATCAAAGGCAGAGGGTGAGCTGCGCCATGGGTCGTGAATCACCGTT
GCTATCGCCTCCAACTTGTCGCTGGAGCCACGCGCCCAGCAGCTAGAGCCAAGATGAATTCCTGAGAGAGTATATATATA
TCGACGTGCAAGATGTGCTTTGCACGTGCACGCTCACTAGTAAACATAAAAATCAAGTTTGTCCTCGCACGTTGTCGCAG
GGACCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis