Browse Element(s) Details


Os.49817.1.S1_at

Description gb:AK111733.1
DB_XREF= gi:37988396
TID=Os.49817.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E19, full insert sequence.
FL= gb:AK111733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1565011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15620NANA4+8472635..8475578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g15630OsAffx.13826.1.S1_at11/114+8477093..8479798Leucine Rich Repeat family protein
LOC_Os04g15640OsAffx.13827.1.S1_at10/114+8484101..8485321hypothetical protein
LOC_Os04g15650Os.49817.1.S1_at11/114+8487803..8490905Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.13825.1.S1_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15660OsAffx.24234.1.S1_x_at1/114+8495072..8497841Leucine Rich Repeat family protein, expressed
LOC_Os04g15670NANA4+8498474..8499100expressed protein
LOC_Os04g15680NANA4+8499387..8499710hypothetical protein
LOC_Os04g15690Os.8531.1.S1_at11/114+8508353..8513023DSBA-like thioredoxin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49817.1.S1_at--780--7991Chr04:8490241..8490265 (25 bp)
GGATGTTGACATAACCGCGCTTCTT
LOC_Os04g15650
Os.49817.1.S1_at--1114--2611Chr04:8490253..8490277 (25 bp)
AACCGCGCTTCTTGGTGACTTTGGA
LOC_Os04g15650
Os.49817.1.S1_at--945--3651Chr04:8490260..8490284 (25 bp)
CTTCTTGGTGACTTTGGATCAGCAA
LOC_Os04g15650
Os.49817.1.S1_at--238--10211Chr04:8490291..8490315 (25 bp)
TATTTCCTGATCTGGTCAGTCCAGA
LOC_Os04g15650
Os.49817.1.S1_at--557--7111Chr04:8490305..8490329 (25 bp)
GTCAGTCCAGAAAGCTTGGCTGATA
LOC_Os04g15650
Os.49817.1.S1_at--257--3451Chr04:8490788..8490812 (25 bp)
CAGTTTGGCGATTTCAGTTTGTGAT
LOC_Os04g15650
Os.49817.1.S1_at--96--5351Chr04:8490814..8490838 (25 bp)
GAAGTTCTGTAATTGCAGGCATACA
LOC_Os04g15650
Os.49817.1.S1_at--595--51Chr04:8490825..8490849 (25 bp)
ATTGCAGGCATACATGAAACTTTTA
LOC_Os04g15650
Os.49817.1.S1_at--147--5551Chr04:8490840..8490864 (25 bp)
GAAACTTTTAACCAGGCAGCATGTG
LOC_Os04g15650
Os.49817.1.S1_at--28--8271Chr04:8490854..8490878 (25 bp)
GGCAGCATGTGAGCTTATTCGTTTA
LOC_Os04g15650
Os.49817.1.S1_at--270--7391Chr04:8490862..8490886 (25 bp)
GTGAGCTTATTCGTTTAAATTCATA
LOC_Os04g15650
Target Sequence 
GGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCT
TGGCTGATATAGGAGGAACAATTGGATACATTGCACCAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTG
TATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCAT
TCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAG
TGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTTCGAAA
GACAGACCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCAGTTT
GTGATAGAAGTTCTGTAATTGCAGGCATACATGAAACTTTTAACCAGGCAGCATGTGAGCTTATTCGTTTAAATTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis