Browse Element(s) Details


OsAffx.31828.1.S1_at

Description tigr:9640.m02081
TID=OsAffx.31828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2204011/11hypothetical protein
LOC_Os10g247002/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31828.1.S1_at--410--5051Chr12:12405556..12405580 (25 bp)
GCAGCATGTTTCTAATGTACCCCTA
LOC_Os12g22040
OsAffx.31828.1.S1_at--595--2971Chr12:12405569..12405593 (25 bp)
AATGTACCCCTAGGACAGCCGATGG
LOC_Os12g22040
OsAffx.31828.1.S1_at--380--10031Chr12:12405610..12405634 (25 bp)
TAGACCGGGCATGTCATCATCGGCA
LOC_Os12g22040
OsAffx.31828.1.S1_at--118--8251Chr12:12405631..12405655 (25 bp)
GGCACAAAGACAGCCGGTTGACCCT
LOC_Os12g22040
OsAffx.31828.1.S1_at--382--1031Chr12:12405688..12405712 (25 bp)
AGGTCACAACATCAATCGGCCAACT
LOC_Os12g22040
OsAffx.31828.1.S1_at--1050--7911Chr12:12405751..12405775 (25 bp)
GGTTGTCGAGCCAATCCAGCCGATA
LOC_Os12g22040
OsAffx.31828.1.S1_at--33--2492Chr12:12405807..12405831 (25 bp)
AACACCAGCCTGTTGGAGCTCAGTT
LOC_Os12g22040
OsAffx.31828.1.S1_at--651--172Chr12:12405897..12405921 (25 bp)
ATTTTCAATATCAGCCTCATTCACC
LOC_Os12g22040
OsAffx.31828.1.S1_at--305--9671Chr12:12405952..12405976 (25 bp)
TCAGCCTCAGTTTTTACCACAATTC
LOC_Os12g22040
OsAffx.31828.1.S1_at--118--131Chr12:12405973..12405997 (25 bp)
ATTCAATCAATTCGACCCAATCCAG
LOC_Os12g22040
OsAffx.31828.1.S1_at--530--3211Chr12:12406007..12406031 (25 bp)
CAAGGAGCGTCTCAGCAGAAGCCCT
LOC_Os12g22040
Target Sequence 
GCAGCATGTTTCTAATGTACCCCTAGGACAGCCGATGGCATCGGCTTCGGCTTCTAGACCGGGCATGTCATCATCGGCAC
AAAGACAGCCGGTTGACCCTTATCTTTTGAGCAGACAACAGCCTCAGCATGCAGGTCACAACATCAATCGGCCAACTCAG
GAGCAGATTGCAGCGATGTTCAAGCCACCTCAACCGGTTGTCGAGCCAATCCAGCCGATACCAACTGGGCAGCGAACACC
TATCAACCAGCAACACCAGCCTGTTGGAGCTCAGTTCATTCCTGAACAGCAAATGTATAATGTACAACAACCTCTTCAGA
ATTATCCTGGTGGCAACCTGAATTTTCAATATCAGCCTCATTCACCTCAGGTTCAATACCAACCAGGAGGATCACCTCAG
CCTCAGTTTTTACCACAATTCAATCAATTCGACCCAATCCAGCAGCAGATGCAAGGAGCGTCTCAGCAGAAGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis