Browse Element(s) Details


OsAffx.19773.1.S1_at

Description tigr:9640.m02086
TID=OsAffx.19773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative
LOC_Os12g22129NANA12+12442385..12442745NA
LOC_Os12g22140OsAffx.17314.2.S1_at6/1112+12448038..12452397glycerol 3-phosphate permease, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19773.1.S1_at--513--8931Chr12:12426803..12426827 (25 bp)
TGACCTTGCTTCATTCTGCTACCCA
LOC_Os12g22090
OsAffx.19773.1.S1_at--112--5851Chr12:12426804..12426828 (25 bp)
GACCTTGCTTCATTCTGCTACCCAT
LOC_Os12g22090
OsAffx.19773.1.S1_at--984--1731Chr12:12426805..12426829 (25 bp)
ACCTTGCTTCATTCTGCTACCCATT
LOC_Os12g22090
OsAffx.19773.1.S1_at--468--4311Chr12:12426806..12426830 (25 bp)
CCTTGCTTCATTCTGCTACCCATTA
LOC_Os12g22090
OsAffx.19773.1.S1_at--471--3631Chr12:12426807..12426831 (25 bp)
CTTGCTTCATTCTGCTACCCATTAA
LOC_Os12g22090
OsAffx.19773.1.S1_at--951--10691Chr12:12426808..12426832 (25 bp)
TTGCTTCATTCTGCTACCCATTAAT
LOC_Os12g22090
OsAffx.19773.1.S1_at--914--7691Chr12:12426887..12426911 (25 bp)
GGGTCTACAGAAGATGTTATGCAGA
LOC_Os12g22090
OsAffx.19773.1.S1_at--117--7811Chr12:12426888..12426912 (25 bp)
GGTCTACAGAAGATGTTATGCAGAC
LOC_Os12g22090
OsAffx.19773.1.S1_at--39--7151Chr12:12426889..12426913 (25 bp)
GTCTACAGAAGATGTTATGCAGACC
LOC_Os12g22090
OsAffx.19773.1.S1_at--538--9531Chr12:12426890..12426914 (25 bp)
TCTACAGAAGATGTTATGCAGACCC
LOC_Os12g22090
OsAffx.19773.1.S1_at--147--3731Chr12:12426891..12426915 (25 bp)
CTACAGAAGATGTTATGCAGACCCC
LOC_Os12g22090
Target Sequence 
TGACCTTGCTTCATTCTGCTACCCATTAATATTGTTGCTGAAAATTGTTTAGGTTATTATGCCTTTCTTAGAATTACTTT
TTTTGGGTCTACAGAAGATGTTATGCAGACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis