Browse Element(s) Details


OsAffx.19774.1.S1_at

Description tigr:9640.m02089
TID=OsAffx.19774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2212010/11ABC transporter AbcG18, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative
LOC_Os12g22129NANA12+12442385..12442745NA
LOC_Os12g22140OsAffx.17314.2.S1_at6/1112+12448038..12452397glycerol 3-phosphate permease, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19774.1.S1_at--760--5751Chr12:12440805..12440829 (25 bp)
GACGTCTCGTTGACGAGCGGCCGTC
LOC_Os12g22120
OsAffx.19774.1.S1_at--571--9411Chr12:12440782..12440806 (25 bp)
TCGTCGTCCAACGTCAGCTGGCAGT
LOC_Os12g22120
OsAffx.19774.1.S1_at--704--4371Chr12:12440775..12440799 (25 bp)
CCAACGTCAGCTGGCAGTGGCAGTG
LOC_Os12g22120
OsAffx.19774.1.S1_at--485--7511Chr12:12440738..12440762 (25 bp)
GTGGCCGGGAGGAGGTGTACTTCGC
LOC_Os12g22120
OsAffx.19774.1.S1_at--898--951Chr12:12440669..12440693 (25 bp)
AGGACCCCGCGGTGTACCTGACATG
LOC_Os12g22120
OsAffx.19774.1.S1_at--865--7551Chr12:12440535..12440559 (25 bp)
GGGCCATCGGGCTGTGGCAAGACGA
LOC_Os12g22120
OsAffx.19774.1.S1_at--883--5771Chr12:12440515..12440539 (25 bp)
GACGACGCTTCTTGATGCACTCGCA
LOC_Os12g22120
OsAffx.19774.1.S1_at--59--1851Chr12:12440513..12440535 (23 bp)
ACGCTTCTTGATGCACTCGCAGGAA
LOC_Os12g22120
OsAffx.19774.1.S1_at--1083--9011NONE
TGCACTCGCAGGAAGGTTAGGGCCA
NONE
OsAffx.19774.1.S1_at--574--10231Chr12:12439377..12439401 (25 bp)
TTAGGGCCAGGCATGAGTAAAACTG
LOC_Os12g22120
OsAffx.19774.1.S1_at--787--8811Chr12:12439349..12439373 (25 bp)
TGATTTTAATCAACGGGCGGCAGGA
LOC_Os12g22120
Target Sequence 
GACGTCTCGTTGACGAGCGGCCGTCGTCGTCCAACGTCAGCTGGCAGTGGCAGTGGCAGCGGCGGCGGTGGCCGGGAGGA
GGTGTACTTCGCCGACGTCGAGGAGGTGCGGGCAGCGCCGGCTGACGCCTGCAGGGAGGACCCCGCGGTGTACCTGACAT
GGGAGGACGTGTGCGTGACGGCGTCCGGCGCCGGCAGCAGGGCGACGCCGGCGAGGATCCTGGAGGGGATCAGCGGGCAC
GCCCGGCCCGGGGAGGTGCTGGCCATCATGGGGCCATCGGGCTGTGGCAAGACGACGCTTCTTGATGCACTCGCAGGAAG
GTTAGGGCCAGGCATGAGTAAAACTGGATTGATTTTAATCAACGGGCGGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis