Browse Element(s) Details


OsAffx.31829.3.S1_at

Description tigr:9640.m02085
TID=OsAffx.31829.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2208011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative
LOC_Os12g22129NANA12+12442385..12442745NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31829.3.S1_at--1060--7811Chr12:12418112..12418136 (25 bp)
GGTCAGCTGTGGATCTATTAGGGAT
LOC_Os12g22080
OsAffx.31829.3.S1_at--442--4171Chr12:12418034..12418058 (25 bp)
CCCAGCAGCATACCTCGAAAAACAT
LOC_Os12g22080
OsAffx.31829.3.S1_at--961--5191Chr12:12417981..12418005 (25 bp)
GAATTGCCGATCGTCGCAAGAGGAA
LOC_Os12g22080
OsAffx.31829.3.S1_at--1114--6191Chr12:12417949..12417973 (25 bp)
GAGGCAACCATCCAAACCAGCAGAG
LOC_Os12g22080
OsAffx.31829.3.S1_at--888--4131Chr12:12417842..12417866 (25 bp)
CGCTCGGAAGATTGAACTTCTAGCT
LOC_Os12g22080
OsAffx.31829.3.S1_at--628--8971Chr12:12417830..12417854 (25 bp)
TGAACTTCTAGCTGAGTTGGAGCAA
LOC_Os12g22080
OsAffx.31829.3.S1_at--483--5451Chr12:12417781..12417805 (25 bp)
GAACGAAAGCTTGCCGATATGCCTA
LOC_Os12g22080
OsAffx.31829.3.S1_at--360--6511Chr12:12417766..12417790 (25 bp)
GATATGCCTAAAGCCACCGAAGACC
LOC_Os12g22080
OsAffx.31829.3.S1_at--66--2451Chr12:12417695..12417719 (25 bp)
AAAATCCCTGAAAGTGATCTCTGGA
LOC_Os12g22080
OsAffx.31829.3.S1_at--962--6412Chr12:12417680..12417704 (25 bp)
GATCTCTGGATCTGATGCAACCGAG
LOC_Os12g22080
OsAffx.31829.3.S1_at--955--5151Chr12:12417664..12417688 (25 bp)
GCAACCGAGGCCCAGATTATCGATG
LOC_Os12g22080
Target Sequence 
GGTCAGCTGTGGATCTATTAGGGATAGATTCCATGAAATCCATGATCAAATCCCGGATGAGTTAGCCGATGCCATCACCC
CAGCAGCATACCTCGAAAAACATCGGCTCAAACTTGAAAAGGCTAAACAAAGAATTGCCGATCGTCGCAAGAGGAAAGAT
CTTGAGGCAACCATCCAAACCAGCAGAGCTTCTATCAATGAAGAAAAGGCAAAACTTGATGAGTTGGAAGCTGGTCCAAG
TTCCACTCAAGCCAACATAGATTGGCTGAACGCTCGGAAGATTGAACTTCTAGCTGAGTTGGAGCAATGCAATGCACAGA
TTGCTATTGAAGAACGAAAGCTTGCCGATATGCCTAAAGCCACCGAAGACCAGAGATCAAAGCTGAAATCCTCTGTCAAA
TACTTAGCCAAATTAACAAAATCCCTGAAAGTGATCTCTGGATCTGATGCAACCGAGGCCCAGATTATCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31829.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis