Browse Element(s) Details


OsAffx.7654.1.S1_at

Description tigr:9640.m02088
TID=OsAffx.7654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2211011/11ABC-2 type transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative
LOC_Os12g22129NANA12+12442385..12442745NA
LOC_Os12g22140OsAffx.17314.2.S1_at6/1112+12448038..12452397glycerol 3-phosphate permease, putative

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7654.1.S1_at--664--10111Chr12:12431374..12431398 (25 bp)
TATGGTGTCACCGAGTTTGTCATCT
LOC_Os12g22110
OsAffx.7654.1.S1_at--307--3671Chr12:12431328..12431352 (25 bp)
CTTACCTAGCCGTCATGATCATAAT
LOC_Os12g22110
OsAffx.7654.1.S1_at--287--5191Chr12:12431296..12431320 (25 bp)
GCAATACTGTACTACCTCACTGGGC
LOC_Os12g22110
OsAffx.7654.1.S1_at--614--1811Chr12:12431233..12431257 (25 bp)
ACCCTCTACATGTGCATCGTGTTGG
LOC_Os12g22110
OsAffx.7654.1.S1_at--404--3571Chr12:12431201..12431225 (25 bp)
CATAATGATGGTGATTGCCGCCGTC
LOC_Os12g22110
OsAffx.7654.1.S1_at--613--3811Chr12:12431144..12431168 (25 bp)
CTCCGGCGTGCAGGCTTTGATGATG
LOC_Os12g22110
OsAffx.7654.1.S1_at--797--6291Chr12:12431126..12431150 (25 bp)
GATGATGACAAACGGCGGCTTCTTC
LOC_Os12g22110
OsAffx.7654.1.S1_at--924--8711Chr12:12431003..12431027 (25 bp)
TGTCGGGCAGACATTCGCGAGCGAT
LOC_Os12g22110
OsAffx.7654.1.S1_at--42--5891Chr12:12430985..12431009 (25 bp)
GAGCGATCAGCTCATCATGGCAAAT
LOC_Os12g22110
OsAffx.7654.1.S1_at--157--151Chr12:12430954..12430978 (25 bp)
ATTACTGGCCATCAGGTTCTCGAGG
LOC_Os12g22110
OsAffx.7654.1.S1_at--294--9831Chr12:12430896..12430920 (25 bp)
TAAACCTCGCCATCCTGTTTGGAAT
LOC_Os12g22110
Target Sequence 
TATGGTGTCACCGAGTTTGTCATCTCCAACACTCTCTCGGCCACTCCTTACCTAGCCGTCATGATCATAATCCCCGGCGC
AATACTGTACTACCTCACTGGGCTAACAAGAGGGGGGAGCAACATCGCCTACTTCGTCGTCACCCTCTACATGTGCATCG
TGTTGGTCGAGAGCATAATGATGGTGATTGCCGCCGTCGTCCCAGACTTCCTGATGGGCATCGTCGTCGGCTCCGGCGTG
CAGGCTTTGATGATGACAAACGGCGGCTTCTTCCGCCTCCCGAACCAGCTCCCGAAGCCGGTGTGGAAGTACCCTTGCTA
CTACATCTCCTTCCATAAGTACGCGGTGCAGGGGTTTTACAAGAACGAGTTTGTCGGGCAGACATTCGCGAGCGATCAGC
TCATCATGGCAAATGCCACCATTACTGGCCATCAGGTTCTCGAGGCGTTGCAGGTGGAGATGTGGTACTCCAAGTGGGTA
AACCTCGCCATCCTGTTTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis