Browse Element(s) Details


Os.54513.1.S1_at

Description gb:AK105494.1
DB_XREF= gi:32990703
TID=Os.54513.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C05, full insert sequence.
FL= gb:AK105494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative
LOC_Os12g22129NANA12+12442385..12442745NA
LOC_Os12g22140OsAffx.17314.2.S1_at6/1112+12448038..12452397glycerol 3-phosphate permease, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54513.1.S1_at--358--10291Chr12:12429622..12429646 (25 bp)
TTTGCGTCATTCAACTACCCATTGG
LOC_Os12g22090
Os.54513.1.S1_at--353--9831Chr12:12429684..12429708 (25 bp)
TAAAAATGACAACTGTCCCCGCTGC
LOC_Os12g22090
Os.54513.1.S1_at--192--8391Chr12:12429772..12429796 (25 bp)
GGCGAAATCCGCCATCATTTGCAGC
LOC_Os12g22090
Os.54513.1.S1_at--935--1671Chr12:12429794..12429818 (25 bp)
AGCCTGGTTTCTGCAGAGCCCTAAA
LOC_Os12g22090
Os.54513.1.S1_at--915--5851Chr12:12429809..12429833 (25 bp)
GAGCCCTAAAACTGTCGCTGACTCA
LOC_Os12g22090
Os.54513.1.S1_at--368--8951Chr12:12429827..12429851 (25 bp)
TGACTCACCTACTTGCTTGGCAACA
LOC_Os12g22090
Os.54513.1.S1_at--389--4931Chr12:12429841..12429865 (25 bp)
GCTTGGCAACACCTCTAGTTTGATG
LOC_Os12g22090
Os.54513.1.S1_at--389--751Chr12:12429909..12429933 (25 bp)
ATGTACGGTCATATTCTGCTCCATT
LOC_Os12g22090
Os.54513.1.S1_at--278--6351Chr12:12429935..12429959 (25 bp)
GATGCCACCAAGGTCAACCGTTAAT
LOC_Os12g22090
Os.54513.1.S1_at--1038--10251Chr12:12429984..12430008 (25 bp)
TTTGTCATCATGTCTCTTGGTGTGT
LOC_Os12g22090
Os.54513.1.S1_at--488--5211Chr12:12430026..12430050 (25 bp)
GAATTCCATGCCATGATGCTCTTGC
LOC_Os12g22090
Target Sequence 
TTTGCGTCATTCAACTACCCATTGGCACAACATAGTTAAAGATGCTCATCTGATTTTATTGATAAAAATGACAACTGTCC
CCGCTGCGTGCAGAGATGCAGAGAATAGGTGTCTGACAAAATTCAAGTGCCAAAGGCTCAGCCTGGCTCAGGCGAAATCC
GCCATCATTTGCAGCCTGGTTTCTGCAGAGCCCTAAAACTGTCGCTGACTCACCTACTTGCTTGGCAACACCTCTAGTTT
GATGTACAGAAGTAACTCTTTTTGACAAACCAGCAAATTGATCGTGTATGTACGGTCATATTCTGCTCCATTTGATGCCA
CCAAGGTCAACCGTTAATTTTCGTAAATCTGAAGTTCTGAACTTTGTCATCATGTCTCTTGGTGTGTGAATGCAGCAGGA
ATTAGAATTCCATGCCATGATGCTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis