Browse Element(s) Details


Os.47558.1.S1_at

Description gb:AK067255.1
DB_XREF= gi:32977273
TID=Os.47558.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098I15, full insert sequence.
FL= gb:AK067255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3368011/11expressed protein
LOC_Os01g321841/11Tetratricopeptide repeat protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed
LOC_Os08g33710Os.11018.1.S1_at11/118+20917866..20920003Extracellular ribonuclease LE precursor, putative, expressed
LOC_Os08g33720Os.13993.1.S1_at11/118+20921818..20924585Malate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47558.1.S1_at--1084--8532Chr08:20902546..20902570 (25 bp)
TGGAGCCATTCCTCATCTTGTTGCA
LOC_Os08g33680
Os.47558.1.S1_at--358--691Chr08:20901886..20901910 (25 bp)
ATGAGCCATACCCAGGTTTCAGCAA
LOC_Os08g33680
Os.47558.1.S1_at--628--2951Chr08:20901846..20901870 (25 bp)
AATGGAGGCCATTCTCAGGGAGAAC
LOC_Os08g33680
Os.47558.1.S1_at--1102--7011Chr08:20901683..20901707 (25 bp)
GTAAAACCCGAACTGTCTGAATATG
LOC_Os08g33680
Os.47558.1.S1_at--494--10711Chr08:20901635..20901659 (25 bp)
TTGCTCTGCCGATTGCTAGGAACAA
LOC_Os08g33680
Os.47558.1.S1_at--203--10751Chr08:20901554..20901578 (25 bp)
TTGCAAGTCCAAATGTTCACAGCGA
LOC_Os08g33680
Os.47558.1.S1_at--410--3311Chr08:20901537..20901561 (25 bp)
CACAGCGAGGTTACTCTTCGGCAGA
LOC_Os08g33680
Os.47558.1.S1_at--95--1551Chr08:20901513..20901537 (25 bp)
AGCATTTCGCCAAACAGCTCAGGAA
LOC_Os08g33680
Os.47558.1.S1_at--586--951Chr08:20901493..20901517 (25 bp)
AGGAACACCACTGCAGCATGTCTTG
LOC_Os08g33680
Os.47558.1.S1_at--118--771Chr08:20901476..20901500 (25 bp)
ATGTCTTGCATTGCTCGATCTCGTT
LOC_Os08g33680
Os.47558.1.S1_at--601--6411Chr08:20901460..20901484 (25 bp)
GATCTCGTTTTAGCATTTTGTACTG
LOC_Os08g33680
Target Sequence 
TGGAGCCATTCCTCATCTTGTTGCAGATACTCAACAAGCAGTTTGGCTATGAGCCATACCCAGGTTTCAGCAAGAATGTG
GACAAGAAAATGGAGGCCATTCTCAGGGAGAACAGGGAGGAGCTCAAGCAGAGGAAGNCCACCTGATTGATTTTGATTCG
GAATCGATTCGAGAGGAAGTGTNACACATGTANAACTTAGCATCTTTCGATTATTACCTACGACGATTCGTGTTGATCAT
GTAGTCATACAGTAAAACCCGAACTGTCTGAATATGATTGTGATGGTGTTGTTTGAGGCTTGCTCTGCCGATTGCTAGGA
ACAATATACAAGATGCAGAGATATGTTATAAATCCTACGCAAATGCGGGCATATTCAGATTTGCAAGTCCAAATGTTCAC
AGCGAGGTTACTCTTCGGCAGAGCATTTCGCCAAACAGCTCAGGAACACCACTGCAGCATGTCTTGCATTGCTCGATCTC
GTTTTAGCATTTTGTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis