Browse Element(s) Details


OsAffx.29493.1.S1_at

Description tigr:9636.m03373
TID=OsAffx.29493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY141987 At1g26760T24P13_13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33620OsAffx.17315.1.S1_at11/118+20864435..20864954Arginine decarboxylase, putative
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29493.1.S1_at--139--8491Chr08:20882235..20882259 (25 bp)
TGGCGGCTCCCAAGGTGGTGCTCCA
LOC_Os08g33650
OsAffx.29493.1.S1_at--3--7631Chr08:20882268..20882292 (25 bp)
GGGACCTGCGGATGTACTACCACTC
LOC_Os08g33650
OsAffx.29493.1.S1_at--897--8691Chr08:20882304..20882328 (25 bp)
TGTCTCAAAGGCACGCGATTGGGTT
LOC_Os08g33650
OsAffx.29493.1.S1_at--175--10831Chr08:20882327..20882351 (25 bp)
TTGGCAAGGTCCAAGGATGGCGTCC
LOC_Os08g33650
OsAffx.29493.1.S1_at--498--3391Chr08:20882445..20882469 (25 bp)
CAGCTGGGCGCTATGTCATGGTGTA
LOC_Os08g33650
OsAffx.29493.1.S1_at--824--8851Chr08:20882479..20882503 (25 bp)
TGATGCCAATGGACGGGTGAGCATT
LOC_Os08g33650
OsAffx.29493.1.S1_at--346--6211Chr08:20882539..20882563 (25 bp)
GAGGCGGTCCAGTGAGTTGCCAATT
LOC_Os08g33650
OsAffx.29493.1.S1_at--810--3151Chr08:20882560..20882584 (25 bp)
AATTCTGCGCCCATCAGACGACGAT
LOC_Os08g33650
OsAffx.29493.1.S1_at--532--6491Chr08:20882594..20882618 (25 bp)
GATAGCACTGTGGTTGGATCCCCGT
LOC_Os08g33650
OsAffx.29493.1.S1_at--31--6391Chr08:20882610..20882634 (25 bp)
GATCCCCGTGTTTGGTGCAGATGGA
LOC_Os08g33650
OsAffx.29493.1.S1_at--583--8331Chr08:20882686..20882710 (25 bp)
GGCTGCGATCGGAATGGCATATTCA
LOC_Os08g33650
Target Sequence 
TGGCGGCTCCCAAGGTGGTGCTCCACGCCGAGGGGGACCTGCGGATGTACTACCACTCGTTCGACGAAATGTCTCAAAGG
CACGCGATTGGGTTGGCAAGGTCCAAGGATGGCGTCCGGTGGAGGAAGGCGGGCAAGGTGCTCGAGGGCGGCAAGGCTGG
GTCGTTCGACGAAGGCGGGGTGCGGCACGGGCATGTCGTCCGGGACCGTGCAGCTGGGCGCTATGTCATGGTGTATGAGG
GTGTTGATGCCAATGGACGGGTGAGCATTGGGATGGCTGTGTCGGAGGACGGGCTAAAGGGGTGGAGGCGGTCCAGTGAG
TTGCCAATTCTGCGCCCATCAGACGACGATGAGGGGTGGGATAGCACTGTGGTTGGATCCCCGTGTTTGGTGCAGATGGA
TGGAGCATATGATTGGAGGATGTATTACACGGGTGTTGGGAGGGATGGTGAGGCTGCGATCGGAATGGCATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis