Browse Element(s) Details


Os.22375.1.S1_x_at

Description gb:AK059468.1
DB_XREF= gi:32969486
TID=Os.22375.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for MYB27 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D10, full insert sequence.
FL= gb:AK059468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3366011/11MYB1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33620OsAffx.17315.1.S1_at11/118+20864435..20864954Arginine decarboxylase, putative
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22375.1.S1_x_at--150--1751Chr08:20887273..20887297 (25 bp)
ACCGCCCTAGAATTATCCGAAAGCA
LOC_Os08g33660
Os.22375.1.S1_x_at--545--2731Chr08:20887253..20887277 (25 bp)
AAGCAACTCCAATGTGTGGCAGCAA
LOC_Os08g33660
Os.22375.1.S1_x_at--784--5491Chr08:20887141..20887165 (25 bp)
GAACACTTCATTGGCTGTGAGGAGT
LOC_Os08g33660
Os.22375.1.S1_x_at--1155--971Chr08:20887122..20887146 (25 bp)
AGGAGTCATGGTTCCCAGGGACAGC
LOC_Os08g33660
Os.22375.1.S1_x_at--157--3491Chr08:20887077..20887101 (25 bp)
CAGGCATGCTGCTTGATGGATCCAA
LOC_Os08g33660
Os.22375.1.S1_x_at--536--7991Chr08:20887028..20887052 (25 bp)
GGATGAGTCCAGCAATGGCCAAGAT
LOC_Os08g33660
Os.22375.1.S1_x_at--980--9031Chr08:20886915..20886939 (25 bp)
TGCAGCCACCTTTGCTCTAGAGCAG
LOC_Os08g33660
Os.22375.1.S1_x_at--14--6111Chr08:20886891..20886915 (25 bp)
GAGTCCTCTCCACTTTTTAAGAAAG
LOC_Os08g33660
Os.22375.1.S1_x_at--431--5571Chr08:20886871..20886895 (25 bp)
GAAAGGCCTTCTGAGCAAATCCATT
LOC_Os08g33660
Os.22375.1.S1_x_at--223--2791Chr08:20886795..20886819 (25 bp)
AAGAGTCTACAACTGCTTCCGCAGT
LOC_Os08g33660
Os.22375.1.S1_x_at--523--5031Chr08:20886775..20886799 (25 bp)
GCAGTTTGCAAATTTTTCCTCCACG
LOC_Os08g33660
Target Sequence 
ACCGCCCTAGAATTATCCGAAAGCAACTCCAATGTGTGGCAGCAAAGAAGCGATGAACTGGAGGGTGAAGAAAGTGAGTG
GAAGTTTGTCAGTAAGCAACAACTGCAGGGAATGCATGGTAAAGAGACAGANGAACACTTCATTGGCTGTGAGGAGTCAT
GGTTCCCAGGGACAGCCANTATCGGAGCAGGCTTCACAGGCATGCTGCTTGATGGATCCAATATGCATGATACATCAGAA
TGCTGGGATGAGTCCAGCAATGGCCAAGATGAGCAAAGAAGCCAGGTGTCAGAAGATGCAGAGAATAAGAACTATTGGAA
TGGCATCTTCAGTATGGTGAATTCAGAGCAGCCACCCCTGCAGCCACCTTTGCTCTAGAGCAGAGTCCTCTCCACTTTTT
AAGAAAGGCCTTCTGAGCAAATCCATTGGATCATCCAATGTCAAAAGAAACTGAAAGAGCAAAGAAAATAGAAGCTACAA
GAGTCTACAACTGCTTCCGCAGTTTGCAAATTTTTCCTCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22375.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis