Browse Element(s) Details


OsAffx.29494.1.S1_at

Description tigr:9636.m03375
TID=OsAffx.29494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY088431 ATAF2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3367010/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed
LOC_Os08g33710Os.11018.1.S1_at11/118+20917866..20920003Extracellular ribonuclease LE precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29494.1.S1_at--815--631Chr08:20894495..20894519 (25 bp)
ATGCACGAGTACTCTAGAGCACCGA
LOC_Os08g33670
OsAffx.29494.1.S1_at--166--5091Chr08:20894470..20894494 (25 bp)
GCACCAACTTCATCAGAGGAGCTCA
LOC_Os08g33670
OsAffx.29494.1.S1_at--700--971Chr08:20894454..20894478 (25 bp)
AGGAGCTCAGGCACGTACACATAAT
LOC_Os08g33670
OsAffx.29494.1.S1_at--75--5111Chr08:20894444..20894468 (25 bp)
GCACGTACACATAATCTTCTCGATA
LOC_Os08g33670
OsAffx.29494.1.S1_at--87--451NONE
ATCTACAGCGAGTGGGTGATCTGCA
NONE
OsAffx.29494.1.S1_at--640--7751Chr08:20893571..20893595 (25 bp)
GGTGTTCAAGAAGCAGCCTCCAATT
LOC_Os08g33670
OsAffx.29494.1.S1_at--719--4451Chr08:20893556..20893580 (25 bp)
GCCTCCAATTGAACACTGGCTGGAA
LOC_Os08g33670
OsAffx.29494.1.S1_at--1121--1111Chr08:20893496..20893520 (25 bp)
AGTGCAGGAGCACACGCCAAACCGG
LOC_Os08g33670
OsAffx.29494.1.S1_at--530--5931Chr08:20893243..20893267 (25 bp)
GAGCACCTTGGTGCTTCGTCGTCAG
LOC_Os08g33670
OsAffx.29494.1.S1_at--285--9411Chr08:20893225..20893249 (25 bp)
TCGTCAGATGACCTGCCGGAGTTGA
LOC_Os08g33670
OsAffx.29494.1.S1_at--464--891Chr08:20893146..20893170 (25 bp)
AGGCCTCATCATCAAACTCAAATTC
LOC_Os08g33670
Target Sequence 
ATGCACGAGTACTCTAGAGCACCGAGCACCAACTTCATCAGAGGAGCTCAGGCACGTACACATAATCTTCTCGATATTAT
CTACAGCGAGTGGGTGATCTGCAGGGTGTTCAAGAAGCAGCCTCCAATTGAACACTGGCTGGAAATGGAGGAGGTGGAGA
CGACGACGACGACGACGACAGTGCAGGAGCACACGCCAAACCGGCGCCGTCTCCCTCCGGCGGAGGCTGCGGCGGCGCCG
CCGCCGCCGTCCGGTCAGCCGTGGCAACACACGAGTCGCCGGTCCGGCGATGGCCGTGCTGCCATCGATGGTGGCAACCG
TGAGGAGGAGGAGGATGAACATGGCCTGGCTCGAGAGGAGTCGTCGTCTCCGGTGGTCATCAGCTCACCATCACGCTGCA
CCTCCTCACCGTCGTCTCGGCTTCTCAACCATGAGCACCTTGGTGCTTCGTCGTCAGATGACCTGCCGGAGTTGATGGAG
TTCGGCGACATCTACGGCGGGATCGCCGCCGGTGGCCCGACGGACCAGCAGGCCTCATCATCAAACTCAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis