Browse Element(s) Details


Os.11018.1.S1_at

Description gb:AB052843.1
DB_XREF= gi:11990467
TID=Os.11018.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11018 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ribonuclease, complete cds, clone:C30227.
PROD=ribonuclease
FL= gb:AB052843.1 gb:AB052842.1 gb:AK058502.1 gb:AK059802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3371011/11Extracellular ribonuclease LE precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed
LOC_Os08g33710Os.11018.1.S1_at11/118+20917866..20920003Extracellular ribonuclease LE precursor, putative, expressed
LOC_Os08g33720Os.13993.1.S1_at11/118+20921818..20924585Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os08g33730NANA8+20929688..20930134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11018.1.S1_at--495--9851Chr08:20919399..20919423 (25 bp)
TACACGCTGTCCCAGATCAAGGGCG
LOC_Os08g33710
Os.11018.1.S1_at--849--1111Chr08:20919460..20919484 (25 bp)
AGTGCAACCGCGACGAGTCCGGCAA
LOC_Os08g33710
Os.11018.1.S1_at--955--1871Chr08:20919472..20919496 (25 bp)
ACGAGTCCGGCAACAGCCAGCTGTA
LOC_Os08g33710
Os.11018.1.S1_at--721--8751Chr08:20919493..20919517 (25 bp)
TGTACCAGCTCTACTTCTGCGTGGA
LOC_Os08g33710
Os.11018.1.S1_at--165--4531Chr08:20919565..20919589 (25 bp)
GCCCCTGCGGCAATCGGATCGAGTT
LOC_Os08g33710
Os.11018.1.S1_at--631--1231Chr08:20919586..20919610 (25 bp)
AGTTCCCGGCGTTCTAGAGCTCTGA
LOC_Os08g33710
Os.11018.1.S1_at--588--7611Chr08:20919650..20919674 (25 bp)
GGGAAGACTCTACCTTCGAAGCATG
LOC_Os08g33710
Os.11018.1.S1_at--578--10611Chr08:20919664..20919688 (25 bp)
TTCGAAGCATGTCCTTTGTCACTGA
LOC_Os08g33710
Os.11018.1.S1_at--702--10231Chr08:20919678..20919702 (25 bp)
TTTGTCACTGACACGTGGGTTCGAT
LOC_Os08g33710
Os.11018.1.S1_at--438--8991Chr08:20919702..20919726 (25 bp)
TGAACCATGGGTTCACTTGTTCAGT
LOC_Os08g33710
Os.11018.1.S1_at--872--991Chr08:20919749..20919773 (25 bp)
AGGTATAGGATCTCAATTCGGGAAA
LOC_Os08g33710
Target Sequence 
TACACGCTGTCCCAGATCAAGGGCGCCATCCAGCGCGGCGTCGGCGCCGAGCCGTTCGTGGAGTGCAACCGCGACGAGTC
CGGCAACAGCCAGCTGTACCAGCTCTACTTCTGCGTGGACGCCGCCGGCGAGCGCTTCGTCGACTGCCCCGNCTCCCCCG
GCGGCCGCCCCTGCGGCAATCGGATCGAGTTCCCGGCGTTCTAGAGCTCTGAGCTCTCTCTCTCTAACCAGCCTCTTCTC
CTAGCTCTACGGGGAAGACTCTACCTTCGAAGCATGTCCTTTGTCACTGACACGTGGGTTCGATGAACCATGGGTTCACT
TGTTCAGTGATAAATGTATGGTGTCTTTGAAGGTATAGGATCTCAATTCGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis