Browse Element(s) Details


Os.49953.1.S1_at

Description gb:AK119426.1
DB_XREF= gi:37989049
TID=Os.49953.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H08, full insert sequence.
FL= gb:AK119426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3370011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed
LOC_Os08g33710Os.11018.1.S1_at11/118+20917866..20920003Extracellular ribonuclease LE precursor, putative, expressed
LOC_Os08g33720Os.13993.1.S1_at11/118+20921818..20924585Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os08g33730NANA8+20929688..20930134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49953.1.S1_at--1005--5411Chr08:20913710..20913734 (25 bp)
GAACCAACTGATGGCTCTCAAGTCT
LOC_Os08g33700
Os.49953.1.S1_at--248--2851Chr08:20913729..20913857 (25 bp)
AAGTCTGAACAGTGTCCTATCCATG
LOC_Os08g33700
Os.49953.1.S1_at--724--731Chr08:20913909..20913933 (25 bp)
ATGTTCTGATTTGGCGCTCCATCAA
LOC_Os08g33700
Os.49953.1.S1_at--201--3031Chr08:20913932..20913956 (25 bp)
AATCCTCGACGCAAACATGTATCCT
LOC_Os08g33700
Os.49953.1.S1_at--227--6911Chr08:20913950..20913974 (25 bp)
GTATCCTTCGTTTGCTAATCAGACC
LOC_Os08g33700
Os.49953.1.S1_at--680--3911Chr08:20913974..20913998 (25 bp)
CTGGCTATTCTTCTGCACATCAATT
LOC_Os08g33700
Os.49953.1.S1_at--388--7791Chr08:20914101..20914125 (25 bp)
GGTGCGCTTAATTTCTTTATTGCTG
LOC_Os08g33700
Os.49953.1.S1_at--13--6091Chr08:20914178..20914202 (25 bp)
GAGTCTATGACCGAGTTTGTTCCCA
LOC_Os08g33700
Os.49953.1.S1_at--945--9311Chr08:20914198..20914222 (25 bp)
TCCCACTAGCTCTCTTATGTTGATG
LOC_Os08g33700
Os.49953.1.S1_at--101--7911Chr08:20914244..20914268 (25 bp)
GGTTCCCTTTTATTTCATCTTGTCA
LOC_Os08g33700
Os.49953.1.S1_at--726--5611Chr08:20914353..20914377 (25 bp)
GACAAAAGACTTGGCTTCTCCGGTT
LOC_Os08g33700
Target Sequence 
GAACCAACTGATGGCTCTCAAGTCTGAACAGTGTCCTATCCATGACAGGCATCTAGGATTTCTAGTGGAATATCCCAATG
GAAGTTCCTTTTGGCATGTTCTGATTTGGCGCTCCATCAATCCTCGACGCAAACATGTATCCTTCGTTTGCTAATCAGAC
CTGGCTATTCTTCTGCACATCAATTATTTTAGTTGATTTGTACAATGAAATTGATGATCAACCAAGCGCTTTCAAGACCA
TTTTTTTTTAAGGACGTTGATTCTCTTCTGAATAAGTCTTATCGATTAGGTGCGCTTAATTTCTTTATTGCTGATTTTAT
ACCATTGGATTACGCAATACAAGAAGATGCGTGCATCATGTATATGAGTCTATGACCGAGTTTGTTCCCACTAGCTCTCT
TATGTTGATGTTGATGTTTGCATGGCATTTTGGTTCCCTTTTATTTCATCTTGTCAAGTGTATACTGCTGTTTAGCTGGT
GAGAGTTTCTTTAAGCATAGATTTGACGAATGGAAGATGCATCAAGCAAATGTCACATCTGACAAAAGACTTGGCTTCTC
CGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis