Browse Element(s) Details


Os.1423.1.S1_at

Description gb:AK102942.1
DB_XREF= gi:32988151
TID=Os.1423.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114L10, full insert sequence.
FL= gb:AK102942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3213011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1423.1.S1_at--465--5631Chr01:17912332..17912356 (25 bp)
GACACATGCTGAACGACATGCTCGA
LOC_Os01g32130
Os.1423.1.S1_at--949--4091Chr01:17912345..17912369 (25 bp)
CGACATGCTCGAACTGTAGCTCTTG
LOC_Os01g32130
Os.1423.1.S1_at--370--1011Chr01:17912508..17912532 (25 bp)
AGGATTCTGGCAGGCAGCGCCAAAA
LOC_Os01g32130
Os.1423.1.S1_at--341--5431Chr01:17912854..17912878 (25 bp)
GAAGCCACTAACATCTGACAAGAAA
LOC_Os01g32130
Os.1423.1.S1_at--953--4171Chr01:17912932..17912956 (25 bp)
CCCTTTCTCAATTCGCATATGCTAA
LOC_Os01g32130
Os.1423.1.S1_at--453--2451Chr01:17912968..17912992 (25 bp)
AAAATCATGTGATGTTTCTCGAGCC
LOC_Os01g32130
Os.1423.1.S1_at--498--6811Chr01:17913003..17913027 (25 bp)
GTTTTTTGGTGGTCGCATATGCCAT
LOC_Os01g32130
Os.1423.1.S1_at--458--7231Chr01:17913014..17913038 (25 bp)
GTCGCATATGCCATCTTTTAGAGGT
LOC_Os01g32130
Os.1423.1.S1_at--539--10591Chr01:17913054..17913078 (25 bp)
TTCTCGAGCCATTTCTGGCTGTGTC
LOC_Os01g32130
Os.1423.1.S1_at--146--6791Chr01:17913091..17913115 (25 bp)
GTTAGCGACAATTTGCTGATACTAT
LOC_Os01g32130
Os.1423.1.S1_at--208--4751Chr01:17913105..17913129 (25 bp)
GCTGATACTATGAGATCACGTTGAA
LOC_Os01g32130
Target Sequence 
GACACATGCTGAACGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGAAGGATTCTGGCAGGCAGC
GCCAAAACCGAAGGANGAAGAAGAGATCTCAGAATCATGTTGAGAAGAAACAGAAGCCACTAACATCTGACAAGAAAAAA
ACGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTT
TAGAGGTAAAATCATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAGGTGA
AATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGCGACAATTTGCTGATACTATGAGAT
CACGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis