Browse Element(s) Details


OsAffx.2129.1.S1_at

Description tigr:9629.m02992
TID=OsAffx.2129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=31939-30407
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3209011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32044OsAffx.19950.1.S1_at1/111+17866666..17869123hypothetical protein
LOC_Os01g32044OsAffx.5782.1.S1_at1/111+17866666..17869123hypothetical protein
LOC_Os01g32060NANA1+17875429..17876778hypothetical protein
LOC_Os01g32070NANA1+17878467..17880574retrotransposon protein, putative, unclassified
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2129.1.S1_at--588--5991Chr01:17893270..17893294 (25 bp)
GAGACTCGATGAAGCTTTGAAATAC
LOC_Os01g32090
OsAffx.2129.1.S1_at--436--1071Chr01:17893227..17893251 (25 bp)
AGTGGGTTCCCCATGGAGGTGCCTA
LOC_Os01g32090
OsAffx.2129.1.S1_at--272--6151Chr01:17893212..17893236 (25 bp)
GAGGTGCCTACGTGCAATGCAGTTA
LOC_Os01g32090
OsAffx.2129.1.S1_at--335--4891Chr01:17893182..17893206 (25 bp)
GCTTACTGCAGAGCCTTGGAGTTTC
LOC_Os01g32090
OsAffx.2129.1.S1_at--162--4451Chr01:17893170..17893194 (25 bp)
GCCTTGGAGTTTCATCATGCTTTCA
LOC_Os01g32090
OsAffx.2129.1.S1_at--708--2771Chr01:17893125..17893149 (25 bp)
AAGAGTGGCATTGGCCCAAATACCC
LOC_Os01g32090
OsAffx.2129.1.S1_at--469--4552Chr07:4231350..4231438 (24 bp)
GCCCAAATACCCGTACCTATGATAT
NONE
OsAffx.2129.1.S1_at--11--1331Chr01:17893051..17893075 (25 bp)
AGAGGCTTATAATCTATTCCAGAGA
LOC_Os01g32090
OsAffx.2129.1.S1_at--727--1351Chr01:17893020..17893044 (25 bp)
AGAGATGGCTGTGAGCCTGAGCTCA
LOC_Os01g32090
OsAffx.2129.1.S1_at--654--5871Chr01:17893008..17893032 (25 bp)
GAGCCTGAGCTCAATACATATACAA
LOC_Os01g32090
OsAffx.2129.1.S1_at--8--8611Chr01:17892980..17893004 (25 bp)
TGGTCGGTATGTTCTGTAGCAATGA
LOC_Os01g32090
Target Sequence 
GAGACTCGATGAAGCTTTGAAATACTTTCAGCTTTCTAAAGAAAGTGGGTTCCCCATGGAGGTGCCTACGTGCAATGCAG
TTATTGGGGCTTACTGCAGAGCCTTGGAGTTTCATCATGCTTTCAAAATGGTTGATGAGATGAGAAAGAGTGGCATTGGC
CCAAATACCCGTACCTATGATATTATTCTTAACCATCTTATAAAATCTGAGAAGATAGAAGAGGCTTATAATCTATTCCA
GAGAATGGAGAGAGATGGCTGTGAGCCTGAGCTCAATACATATACAATGATGGTCGGTATGTTCTGTAGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis