Browse Element(s) Details


OsAffx.18954.1.S1_at

Description tigr:9639.m01875
TID=OsAffx.18954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2002010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19970OsAffx.18275.2.S1_x_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.2.S1_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.13786.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19980NANA11+11474914..11475132hypothetical protein
LOC_Os11g19990OsAffx.22699.1.S1_x_at2/1111+11479853..11484754retrotransposon protein, putative, unclassified
LOC_Os11g20000NANA11+11485424..11487082hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_x_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20020OsAffx.18954.1.S1_at10/1111+11497370..11499036hypothetical protein
LOC_Os11g20030NANA11+11503087..11508142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20040OsAffx.18955.1.S1_at10/1111+11516093..11518499O-methyltransferase family protein
LOC_Os11g20050NANA11+11518971..11519439hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18954.1.S1_at--941--1731Chr11:11497430..11497454 (25 bp)
ACCATTCGCTCGCTCTATGACGATG
LOC_Os11g20020
OsAffx.18954.1.S1_at--1157--10631Chr11:11497434..11497458 (25 bp)
TTCGCTCGCTCTATGACGATGGCGA
LOC_Os11g20020
OsAffx.18954.1.S1_at--890--851Chr11:11497452..11497476 (25 bp)
ATGGCGACGCTTGCTTGAACGACGG
LOC_Os11g20020
OsAffx.18954.1.S1_at--872--5792Chr11:11497457..11497481 (25 bp)
GACGCTTGCTTGAACGACGGTTGTG
LOC_Os11g20020
OsAffx.18954.1.S1_at--25--3632Chr11:11497461..11497485 (25 bp)
CTTGCTTGAACGACGGTTGTGTGTG
LOC_Os11g20020
OsAffx.18954.1.S1_at--31--1931Chr11:11497950..11497974 (25 bp)
ACGGTGAGCCTGGTGAAGGTTCGTC
LOC_Os11g20020
OsAffx.18954.1.S1_at--52--2011NONE
ACTCAAGTCCTGATGCAAAAGCCAT
NONE
OsAffx.18954.1.S1_at--360--1691Chr11:11498945..11498969 (25 bp)
AGCCATCAAATTTTAGTGAGCCTGA
LOC_Os11g20020
OsAffx.18954.1.S1_at--974--7371Chr11:11498960..11498984 (25 bp)
GTGAGCCTGAGTACACAGTAATGAT
LOC_Os11g20020
OsAffx.18954.1.S1_at--484--6091Chr11:11498968..11498992 (25 bp)
GAGTACACAGTAATGATTGTTCATT
LOC_Os11g20020
OsAffx.18954.1.S1_at--971--6593Chr11:11498982..11499006 (25 bp)
GATTGTTCATTGTGAGCATGACTTC
LOC_Os11g20020
Target Sequence 
ACCATTCGCTCGCTCTATGACGATGGCGACGCTTGCTTGAACGACGGTTGTGTGTGGCGAAGGTGGAGTCAAGAGGAAGA
ACTTGCAGGGATAGCGGGAGTCTCTTGTTACGGTGAGCCTGGTGAAGGTTCGTCGGGGCAGCTCGGCGTGAGCGGCGAAA
AAGGATCAACTCAAGTCCTGATGCAAAAGCCATCAAATTTTAGTGAGCCTGAGTACACAGTAATGATTGTTCATTGTGAG
CATGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis