Browse Element(s) Details


OsAffx.18955.1.S1_at

Description tigr:9639.m01877
TID=OsAffx.18955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=herbicide safener binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2004010/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20010OsAffx.31070.1.S1_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_x_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20020OsAffx.18954.1.S1_at10/1111+11497370..11499036hypothetical protein
LOC_Os11g20030NANA11+11503087..11508142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20040OsAffx.18955.1.S1_at10/1111+11516093..11518499O-methyltransferase family protein
LOC_Os11g20050NANA11+11518971..11519439hypothetical protein
LOC_Os11g20060OsAffx.22449.1.S1_at1/1111+11530988..11535072hypothetical protein
LOC_Os11g20060OsAffx.31892.1.S1_x_at1/1111+11530988..11535072hypothetical protein
LOC_Os11g20060OsAffx.31892.5.S1_x_at1/1111+11530988..11535072hypothetical protein
LOC_Os11g20060OsAffx.28081.1.S1_x_at1/1111+11530988..11535072hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18955.1.S1_at--337--11Chr11:11517964..11517988 (25 bp)
ATTTGGACCCGGAGACACACGGGCT
LOC_Os11g20040
OsAffx.18955.1.S1_at--912--2071Chr11:11517948..11517972 (25 bp)
ACACGGGCTGCTCAACGAAGGTCTG
LOC_Os11g20040
OsAffx.18955.1.S1_at--1092--3631Chr11:11517767..11517791 (25 bp)
CTTCCTCGCGTGATTGGCGACAAAA
LOC_Os11g20040
OsAffx.18955.1.S1_at--791--791Chr11:11517721..11517745 (25 bp)
ATGTGGCCGGTGACATGCTCAGCTT
LOC_Os11g20040
OsAffx.18955.1.S1_at--76--6351NONE
GATGCTAAAGGTTGTACTTCACCAT
NONE
OsAffx.18955.1.S1_at--782--9851Chr11:11516259..11516283 (25 bp)
TAGTGATTAGTTCTACCTCCGGACC
LOC_Os11g20040
OsAffx.18955.1.S1_at--1150--9531Chr11:11516248..11516272 (25 bp)
TCTACCTCCGGACCATTGCTGGAAG
LOC_Os11g20040
OsAffx.18955.1.S1_at--1103--9111Chr11:11516232..11516256 (25 bp)
TGCTGGAAGCCGAGCTCCTTATGGA
LOC_Os11g20040
OsAffx.18955.1.S1_at--657--4991Chr11:11516202..11516226 (25 bp)
GCATGATACTGATCGGCAAAGGCCA
LOC_Os11g20040
OsAffx.18955.1.S1_at--956--2451Chr11:11516164..11516188 (25 bp)
AACAAGTGGTGTGATCTCTTCAAAA
LOC_Os11g20040
OsAffx.18955.1.S1_at--763--2311Chr11:11516140..11516164 (25 bp)
AAAGCGGGCTTCAGTGATTACAAGA
LOC_Os11g20040
Target Sequence 
ATTTGGACCCGGAGACACACGGGCTGCTCAACGAAGGTCTGGCGGCGCACGACGGCTCGGGATTCGCCGCCGTTCTGCGG
GAGTGTCGTGAGGTGTTCCAGGGGCTGGAGTCGCTGACAGACTGCGGCGGCGGCGACGGCGCGACGGCGAGGACCATCGT
CGAGGCCTTCCCACACGTCAAGTGCACTGTGCTGGACCTTCCTCGCGTGATTGGCGACAAAACGACTGATGGGGTTGTGA
GCTATGTGGCCGGTGACATGCTCAGCTTCATCCCACCTGCACAAGCTGTGATGCTAAAGGTTGTACTTCACCATTGGAGT
GACCAGGATTGCGTGAAAATCCTAGCTCATTGCAAGAAAGCTATTCCATCACGAGAGGCAGGAGGTAAAGTGATCATCAT
TGATGTAGTGATTAGTTCTACCTCCGGACCATTGCTGGAAGCCGAGCTCCTTATGGATGTGGGCATGATACTGATCGGCA
AAGGCCAACAGCGAGATGAAAACAAGTGGTGTGATCTCTTCAAAAAAGCGGGCTTCAGTGATTACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis