Browse Element(s) Details


Os.32685.1.S1_at

Description gb:AK103249.1
DB_XREF= gi:32988458
TID=Os.32685.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to protein kinase AtSIK (P0703B11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123M05, full insert sequence.
FL= gb:AK103249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6070011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32685.1.S1_at--28--1091Chr01:35423599..35423623 (25 bp)
AGGGCCGTTGTGGAGTCCCTAGCAA
LOC_Os01g60700
Os.32685.1.S1_at--66--7911Chr01:35423558..35423582 (25 bp)
GGTTCCATGTCGATATCCTTTGCAA
LOC_Os01g60700
Os.32685.1.S1_at--211--3551Chr01:35423529..35423553 (25 bp)
CATCTGCTGCCCCAAGAAAGGTGAT
LOC_Os01g60700
Os.32685.1.S1_at--444--431Chr01:35423479..35423503 (25 bp)
ATCATTCATCACCATCCTGTCGTAA
LOC_Os01g60700
Os.32685.1.S1_at--864--1611Chr01:35423371..35423395 (25 bp)
AGCTGTGCTCTGGATGACCCTAGAG
LOC_Os01g60700
Os.32685.1.S1_at--830--1571Chr01:35423344..35423368 (25 bp)
AGCTCTATCAAGAAATCGCCTTCCC
LOC_Os01g60700
Os.32685.1.S1_at--1015--4411Chr01:35423327..35423351 (25 bp)
GCCTTCCCCTATTTTACGGAGATCT
LOC_Os01g60700
Os.32685.1.S1_at--348--9571Chr01:35423265..35423289 (25 bp)
TCTTCTCTTCACTTCGATTTGTTTG
LOC_Os01g60700
Os.32685.1.S1_at--609--2291Chr01:35423190..35423214 (25 bp)
AAATGGCCTTATGAACTCCCTTCAG
LOC_Os01g60700
Os.32685.1.S1_at--1085--1611Chr01:35423088..35423112 (25 bp)
AGCGTGTTGAGTGCGCCTTGTAAAC
LOC_Os01g60700
Os.32685.1.S1_at--164--2591Chr01:35423046..35423070 (25 bp)
AACGTGTGTCACTCAGTTCTTTTTT
LOC_Os01g60700
Target Sequence 
AGGGCCGTTGTGGAGTCCCTAGCAAGCGTCCAGGACATAAAGGTTCCATGTCGATATCCTTTGCAAGAGCCATCTGCTGC
CCCAAGAAAGGTGATGTTAAAATCTACAAGTCTCAATGGCATCATTCATCACCATCCTGTCGTAACCTTCTCACCGTCAC
CTCCTTCGCGAAACCAACATTTGCTCTCGCCAAGGTCATCCACGTCTGCACTGCTTCCTCCAAGGACCAGCTGTGCTCTG
GATGACCCTAGAGTAAGCTCTATCAAGAAATCGCCTTCCCCTATTTTACGGAGATCTGGTGTTGAGGGTTTTTGATTGTC
CATATTTTTTTTTCTCTTCTCTTCACTTCGATTTGTTTGTTGTTTTTGCTAGCCTAGTGGTTTTAGTGTAATCTCATATA
TTGCAAGACAAATGGCCTTATGAACTCCCTTCAGTAGTACTAAGAAGGGAAGGGTGAACTGTAGATAGAACCAGGTTGTA
GATACTTTTCGTTTTCTAATTGGATGGAAGCAGCGTGTTGAGTGCGCCTTGTAAACTCCATTATGCAATAATAAACGTGT
GTCACTCAGTTCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis