Browse Element(s) Details


OsAffx.23876.1.S1_x_at

Description tigr:9629.m05966
TID=OsAffx.23876.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6069011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23876.1.S1_x_at--579--3591Chr01:35421327..35421351 (25 bp)
CATTGCCATGGAGATAGTCGAGGAA
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--566--9571Chr01:35421389..35421413 (25 bp)
TCAGCCTCGACCTGAACGGTGGCGG
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--371--1631Chr01:35421455..35421479 (25 bp)
AGCGGCTGGCCATCGAGGCCCAGCT
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--900--9411Chr01:35421536..35421560 (25 bp)
TCGTCGCGCCGCAGGACAAGCAGGA
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--1057--9331Chr01:35421539..35421563 (25 bp)
TCGCGCCGCAGGACAAGCAGGAAGC
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--616--951Chr01:35421548..35421572 (25 bp)
AGGACAAGCAGGAAGCCCCGCCGGG
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--33--5931Chr01:35421601..35421625 (25 bp)
GAGAAACCGGGAGCGGGACGTGCGC
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--1104--1031Chr01:35421634..35421658 (25 bp)
AGGTCCTGGCTGCTGGAGGCGTTGA
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--709--9131Chr01:35421644..35421668 (25 bp)
TGCTGGAGGCGTTGAAGCGGCTGCT
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--246--1631Chr01:35421659..35421683 (25 bp)
AGCGGCTGCTCTGCTGGCTCGGCAT
LOC_Os01g60690
OsAffx.23876.1.S1_x_at--425--9091Chr01:35421665..35421689 (25 bp)
TGCTCTGCTGGCTCGGCATCGGCGG
LOC_Os01g60690
Target Sequence 
CATTGCCATGGAGATAGTCGAGGAAGAAGACGCCGGCGCCACCAGGCTGGGGCGGCTCAGCCTCAGCCTCGACCTGAACG
GTGGCGGCGGCGGCGCGTTCCGCCCCAGCACGCTGCTCGACGAGTACGAGCGGCTGGCCATCGAGGCCCAGCTCGACCGG
GCCGTCCTGCGCCGGAGCTACTCCGAGCCGAGCCCGTCCCGTCTCGCCGTCGTCGCGCCGCAGGACAAGCAGGAAGCCCC
GCCGGGCGCTGCCGGCCGACGTGCCAAGGAGGAGGAGAAACCGGGAGCGGGACGTGCGCCGGCGCGGAGGTCCTGGCTGC
TGGAGGCGTTGAAGCGGCTGCTCTGCTGGCTCGGCATCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23876.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis