Browse Element(s) Details


Os.14124.1.S2_at

Description gb:AK119168.1
DB_XREF= gi:37988791
TID=Os.14124.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to methionyl-tRNA synthetase (P0703B11.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F11, full insert sequence.
FL= gb:AK119168.1 gb:AK103171.1 gb:AK073951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6066011/11tRNA binding domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006431biological_processmethionyl-tRNA aminoacylation
GO:0000049molecular_functiontRNA binding
GO:0004825molecular_functionmethionine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14124.1.S2_at--702--1391Chr01:35397725..35397748 (24 bp)
AGACGTAATGTCTGCCGGATTGGTC
LOC_Os01g60660
Os.14124.1.S2_at--1144--4251Chr01:35397312..35397734 (25 bp)
CCGGATTGGTCTTGTGTGCTTCAAA
LOC_Os01g60660
Os.14124.1.S2_at--481--6951Chr01:35397271..35397295 (25 bp)
GTAGAGCCATTGATTCCTCCAGAAG
LOC_Os01g60660
Os.14124.1.S2_at--1070--9791Chr01:35397242..35397266 (25 bp)
TAAGCCTGGAGAGCGTATTTCATTT
LOC_Os01g60660
Os.14124.1.S2_at--196--2491Chr01:35396754..35396777 (24 bp)
AACAGCTCGACAAGATCACACCGGA
LOC_Os01g60660
Os.14124.1.S2_at--542--2171Chr01:35396442..35396760 (25 bp)
ACACCGGATCTTCACACTGATGGAA
LOC_Os01g60660
Os.14124.1.S2_at--1160--9111Chr01:35396377..35396401 (25 bp)
TGCTGGTCCATGTAGATCTTCTGTT
LOC_Os01g60660
Os.14124.1.S2_at--194--6431Chr01:35396363..35396387 (25 bp)
GATCTTCTGTTCCTAATGCGAGCAT
LOC_Os01g60660
Os.14124.1.S2_at--817--7011Chr01:35396275..35396299 (25 bp)
GTACTATTTCATCTTGCATCTTATT
LOC_Os01g60660
Os.14124.1.S2_at--961--9851Chr01:35396251..35396275 (25 bp)
TACATGCCCTATCAACTGTTGTCAG
LOC_Os01g60660
Os.14124.1.S2_at--610--4631Chr01:35396227..35396251 (25 bp)
GCGTAGCGTCCATCTACTGTGATAT
LOC_Os01g60660
Target Sequence 
AGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAG
GAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAG
CTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGC
TGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTA
TAACACNATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCA
TCTACTGTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14124.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis